Vibrio scophthalmi: VSVS12_00539 Help Entry VSVS12_00539      CDS       T04650                                  Name (GenBank) RNA polymerase sigma-54 factor   KO K03092   RNA polymerase sigma-54 factor Organism vsc  Vibrio scophthalmi Pathway vsc02020   Two-component system vsc02040   Flagellar assembly vsc05111   Biofilm formation - Vibrio cholerae Brite KEGG Orthology (KO) [BR:vsc00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     VSVS12_00539  09140 Cellular Processes   09145 Cellular community - prokaryotes    05111 Biofilm formation - Vibrio cholerae     VSVS12_00539   09142 Cell motility    02040 Flagellar assembly     VSVS12_00539  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:vsc03021]     VSVS12_00539 Transcription machinery [BR:vsc03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      VSVS12_00539 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_21 Motif Other DBs NCBI-ProteinID:  ANS84345 UniProt:  A0A1B1NL45 LinkDB All DBs Position 1:complement(572257..573717) Genome browser AA seq 486 aa AA seqDB search MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGNEELTTSE EKNRNEEKESSAEVAESEQQDSSELIEKSEISSELEIDTTWDDVYSANTGSTGIAVDDDA PIYQGETTESLYDYLIWQLDLTPFSELDRTIALALIDAIDDYGYLTVPLSEILENFDHEE VEPEEIEAVRKRIQQFDPLGVASINLQDCLLLQLATYPEDTPWLNEAKLVLTDHIDQLGN RDYKLIIKETKLKETDLRDVLKLIQQLDPRPGSRISSEQAEYVIPDVSVFKEHGKWMVTS NPDAIPRLKVNQQYAALGKGSSPDSQYIRSNLQEAKWLIKSLESRNETLLKVAKCIVEHQ RNFFEYGEEAMKPMVLNDVALSVDMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTDN GGECSSTAIRALIKKLVAAENSAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPSS QRKRLL NT seq 1461 nt NT seq  +upstreamnt  +downstreamnt atgaaaccctcattacaactcaagctaggacaacagttggcgatgacgccacagttacaa caagccattcgcttgttgcagctgtctacattagatcttcaacaagagattcaagaagcc ttggactccaacccactgctcgaagtggaggaaggcaatgaagaactgaccaccagcgaa gagaaaaaccgtaatgaggaaaaagaatccagtgcggaagtcgcagaaagtgaacagcaa gatagctcagagctgattgaaaaatcagagatcagttctgaacttgaaatagacactaca tgggatgatgtctatagcgcaaataccggcagtactggcatcgccgtcgatgacgatgca ccgatttatcaaggtgaaactaccgaatctctttacgactacctcatctggcaactcgat ttaaccccatttagtgaacttgatagaaccattgcacttgcactgattgatgccattgat gattacggttatctaaccgtaccgctttccgaaattctggaaaactttgatcatgaagaa gttgaaccagaggaaattgaagccgttcgtaaacgaattcagcaatttgacccactcggt gtcgcctctatcaacttacaagactgcctactactccagcttgcgacttacccagaagac acgccttggttaaatgaagctaaactggtgttgaccgatcatattgatcaacttggtaat cgggattacaagttgatcatcaaagagactaagcttaaagaaacggatctacgtgatgta ctcaagctgatccaacaattggatccgcgtccgggtagtcgcatatccagtgagcaagcc gaatacgtgatccctgatgtatccgtatttaaagagcatggaaaatggatggtaaccagc aatcctgatgccattccacgtttaaaagtcaatcaacagtacgccgcactcggcaaagga agcagcccagatagccagtacattcgttctaatttgcaagaagcaaaatggctaatcaaa agcttagaaagccgaaacgagacactgctcaaagttgccaagtgtattgttgaacatcaa agaaatttcttcgagtatggcgaagaggcgatgaaaccaatggtactcaatgacgtcgct ctctccgtggatatgcatgagtcaactatctctcgtgttacgacacagaagtatatgcac acgccacgcggtatatttgaattgaagtatttcttctccagtcacgtcagtacagacaat ggtggagaatgctcttcaactgcaattcgtgctttaattaaaaagctcgtcgctgcagaa aacagcgctaagcctcttagcgatagcaaaattgcagctctactcgctgaccaagggatt caggtcgctagacgaacaatagctaaataccgagagtccttgggcattgccccttcaagt cagcgtaaacgcctactttaa

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