Vibrio scophthalmi: VSVS12_00880
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Entry
VSVS12_00880 CDS
T04650
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03030
DNA replication
vsc03430
Mismatch repair
vsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSVS12_00880 (dnaE)
03430 Mismatch repair
VSVS12_00880 (dnaE)
03440 Homologous recombination
VSVS12_00880 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsc03032
]
VSVS12_00880 (dnaE)
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_00880 (dnaE)
Enzymes [BR:
vsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VSVS12_00880 (dnaE)
DNA replication proteins [BR:
vsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VSVS12_00880 (dnaE)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VSVS12_00880 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ANS84668
LinkDB
All DBs
Position
1:938954..942433
Genome browser
AA seq
1159 aa
AA seq
DB search
MSEPKFIHLRVHSDYSMIDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGAAHGC
GIKPIIGADFVMQSPEFGDELTKLTVIASDNTGYKNLTLLISKAYLRGHVQHQPVIDREW
LVELAEGLIILSGGKSGEIGKALLKGNQALVNQCVGFYQQYFADRFYLELTRTGRADEES
YLHFALELAERADLPVVATNEVVFLREDLFDAHEIRVAIHDGYTLEDPRRPKNYSSQQYL
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLWEYFLPAFPTEGMEETDFLVMKSREGL
EERLEFLFPDEAVRLARRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNEIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFAAEPA
LPELYAADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALRLINPRLEREGKAPVRIESIPLVDEASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRAIFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYRFNVDEDGAIVYGIGAIKG
VGEGPIEAILASRNQDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALMA
SLNDAVKAASQHHQAESFGQTDLFGVLTEAPEEVEHKYTKVPPWPEKVWLEGERDTLGLY
LTGHPINAYIKELGKYTSCRLNDATPTRRDQSVTIAGLVIAARVMTTKRGNRIGLMTLDD
RSGRMEVMLFSDALERYAELLESDKILVVSGQVSFDDFNGGLKMTAREVMDLGSAREKYA
RGLSVSISEAQIDNQFFERFNTILEPYRAGTIPVHVYYQRSDARARLTLGTEWRVTPSDT
LLDDLKQLLGPDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccaaagtttatccatcttcgagtccacagtgactactccatgatcgatggc
ctatcaaaagtgcctccgctggtgaagaaagtcgccgagatgggtatgcctgcaatggca
ttaaccgattttaccaacttatgtggtttggtgaagttttatggtgcggcgcacggctgt
ggtatcaaacccatcattggtgctgattttgtcatgcagtcaccggaatttggtgatgaa
ctgactaaattaaccgttattgcgagcgataatactggttataaaaacttaactctgttg
atctcgaaagcgtacttgcgtgggcacgttcaacaccagcccgttatcgatagagagtgg
ttagtggaattagcggaagggctgatcattctctctggcggtaaaagtggcgaaattggt
aaagcgctattaaaaggcaaccaagcattggtgaatcagtgcgtgggtttttatcagcaa
tactttgccgatcgcttttaccttgaattgacacgtacgggtcgtgccgatgaagagagc
taccttcactttgcgttagagttggccgagcgcgctgacttacctgttgtcgccaccaat
gaagtggtgttcttgcgtgaagatttgtttgatgcgcacgaaatccgcgtggctatccac
gatggttatacccttgaggaccctcgtcgtcctaagaattacagctctcagcaataccta
cgtagtgaagaagagatgtgcgagctattcgcggacatccctgaagcactcgagaacagt
gttgagattgctaagcgttgtaatgtgacagtaaggctgtgggagtacttcctacccgct
ttcccaactgaagggatggaagaaacagactttcttgtgatgaagtctcgtgaaggctta
gaagagcgtttagaattcctctttcctgatgaagcagtccgtttggctcgtcgcccagaa
tatgatgagcgtctgcagattgaactcgacgtaatcaaccagatgggattccctggttac
ttcttgattgtaatggagtttatccagtggtcaaaagacaatgagattcctgttggtccg
ggtcgtggttcaggtgctggctcgttggtggcatacgcgctgaagatcacggatttggat
ccacttgaatacgatctgctgttcgaacgtttcttgaacccagaacgtgtctcaatgccc
gatttcgacgtcgatttttgtatggataagcgtgaccaagtgattgatcacgtagccgaa
atgtatgggcgtgatgcggtatcgcagatcatcacctttggtaccatggcggccaaagca
gttattcgcgatgttggccgtgttctaggtcatccatttggttttgttgaccgtatctct
aagcttgtgccgccagatccgggtatgacactcgaaaaagcctttgccgcagagcctgca
ttaccagagctgtacgctgcagatgaagaagtcaaagagctgattgataagtgccgtatt
ctggaaggttgtacgcgaaatgcaggtaaacatgcgggtggtgtggttatctcgccaacc
acgattaccgattttgcacctatctatgccgatgcggaaggacacttccctgttactcaa
tttgataagaatgatgttgaaaccgcaggtctggtaaaattcgacttcttgggcctgcgt
acgctgaccatcattgactgggcactgcgtctgattaacccaaggctagaacgtgaaggg
aaagccccggtacgtatcgagtctatcccactggttgatgaagcgtcgttccgattgctg
caaaactcagagactaccgcggtattccagcttgaatctcgtggtatgaaagagctgatc
aagcgtctgcaaccagactgttttgaagatatcatcgcattggtggctctattccgtccg
ggcccgctacaatcaggcatggttgataactttatcgaccgtaagcacgggcgagaagcg
gtctcttacccggatgaaaagtggcaacatgagtcactaaaagagattctagaaccgacg
tacggcatcattctttatcaagaacaggtcatgcagatcgcacaggtcttatctggttac
acccttggtggtgcggatatgcttcgtcgtgcgatgggtaagaaaaaaccggaagagatg
gccaagcagcgtgctatcttcgaagaaggcgcggtagccaacggcgttgatggcgaattg
gcgatgaaaatcttcgacttagtagaaaagttcgcaggttacggttttaacaaatcgcac
tcagccgcttacgcactggtttcttaccaaacattatggttaaaaacccattacccagct
gaatttatggcggctgtaatgacggccgatatggacaacaccgaaaaagtggttggcttg
gtcgatgaatgcttgcgcatgaagctgaaagtgttaccgccagacattaactccggtttg
taccgctttaatgttgatgaagacggcgcgattgtttacggtatcggtgcaatcaaaggg
gttggtgaaggtccaattgaagcgatattagcgtcgcgtaaccaagatggtcactttaag
gatttgtttgatttttgcgctcgtattgatttgaaaaaggtcaataaacgcgtgatagaa
aaattgatctatgctggtgcattggaccgattaggcccacaccgtgccgctttgatggcc
tcattgaatgatgcggtgaaggccgcgagtcaacatcatcaagcagaatcctttggtcaa
accgatctatttggcgtactcaccgaagcgccagaagaagttgagcacaaatatactaaa
gtgccgccgtggccagagaaagtatggctggaaggtgagcgtgatacactcggtctttat
ttgaccggccacccaattaatgcctacatcaaggaactgggtaagtacactagctgtcga
cttaatgatgcaacgccgactcgtcgcgatcaatcggttaccattgcgggcttggtgatt
gccgcgcgagtgatgaccaccaagcgaggaaatcgtattggtttgatgacactcgatgat
cgcagcggccggatggaagtgatgttgttctcagatgcgctagaacgatatgcagaatta
cttgaaagcgataaaattttagtcgtttccggacaggtcagctttgatgatttcaacggg
ggtcttaaaatgaccgcgcgcgaggtcatggatcttggcagtgcccgtgaaaaatatgca
cgtggcctttctgtttcgattagtgaagcacaaatcgataaccaattttttgagcgcttt
aataccatcttagagccttatcgtgcaggaacgattcctgtccatgtatactaccaacgt
tcagatgctagagcgcgcttaacgttgggcacagagtggcgcgtaacgccaagcgacacg
ctacttgatgatttaaaacagctgcttggacctgaccaagtagaactcgaatttaactaa
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