Vibrio scophthalmi: VSVS12_00886
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Entry
VSVS12_00886 CDS
T04650
Name
(GenBank) Membrane-bound lytic murein transglycosylase D
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
vsc
Vibrio scophthalmi
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vsc01011
]
VSVS12_00886
Enzymes [BR:
vsc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
VSVS12_00886
Peptidoglycan biosynthesis and degradation proteins [BR:
vsc01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
VSVS12_00886
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM3_NFP
LysM2_CERK1_LYK3_4_5
Motif
Other DBs
NCBI-ProteinID:
ANS84674
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Position
1:complement(946929..948500)
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AA seq
523 aa
AA seq
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MRFKHSWVLALVLTGCQMTQPTTQDSDVETTSDKTSTATVVPATPATTPVESQVVATPVV
TPQSQQDVWKRIAMQLEMPIPDHKTVDYYRTWYLKHPGHLKTVSQRAQPFLYLITEKIEQ
RGLPLELALLPVVESSFDAFAYSHGSAAGLWQFVPSTGKMYGLEQDFWYDGRRDVDAATD
AALDFLTDLNQRFDGNWSHAIAAYNSGGGRVSSAIRKNTKAGKPIDFFSLSLPKETSAYV
PKLLALADVIANQEKYGIDIPPIANKPVVELVKPNEQLDLAIAANYADISVRELQSLNPA
YNQWATSPDGNTQLLLPIASVDKFNTQLAQNRGKGMKVARYKVQSGDTISVLATKYNTTS
QVIRTANNMTNNNIRIGQHLLIPISTKDDKAYALSASNRLAKTQAKARGKYKLTHTVAKG
DSLWSIAKANKVSHTSLAKWNGMGPRDTLRIGQDLVIWKNSADGAVIRTVFYQVRSGDTV
SGIANKFKVKTTDVVKWNSLEKKKYLKPGQKLKLYVDVTKVSV
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaaacacagctgggttctggcactggtattaaccggttgtcaaatgacccag
cctactactcaagattctgatgtagaaaccacctcagataagacctctactgcaacagta
gttcctgcaacaccggccactacgcctgtagaatctcaagtagttgcaacgccggttgtg
acaccacagtcacaacaagatgtgtggaaacgtatcgcgatgcagcttgagatgccaatt
cccgatcataaaacggtcgattattatcgtacttggtatctcaaacacccagggcatcta
aaaaccgtttctcaacgcgcccagccatttctttatctaattacagaaaaaattgagcaa
cgtggtttaccgttagagctcgcgctattacctgttgtagaaagctcgtttgatgctttt
gcgtattcacacggcagtgcggcgggtctttggcagtttgtcccttcaacaggcaaaatg
tacggccttgaacaagacttttggtatgacggtcgccgtgacgtcgatgcagcaacggat
gcagccttagactttctaactgacctcaaccaacgctttgacggcaactggtcacatgcg
attgctgcctacaacagtggcggtggtcgtgtatcgagcgccattcgtaaaaacaccaaa
gcaggtaaaccgatcgacttcttttctctttctttaccaaaagagaccagtgcgtatgta
ccgaagctgcttgcccttgcggatgtgatcgccaatcaagagaaatacggaattgatatc
ccgccgattgctaacaaacctgtggtcgaattggtgaaaccgaatgaacagcttgatctc
gcgattgctgctaactacgccgacatttcggtccgtgagctacaaagcttaaacccagct
tacaaccaatgggcaacatcaccagatggcaatacgcaactgttgctgcctatcgcttca
gttgataaatttaacacgcaattggcacaaaatcgcggcaaaggcatgaaggtcgctcgc
tataaagtgcaatcaggcgacaccatcagcgtgctagcaaccaagtacaacaccaccagc
caagtgattcgtactgcgaataacatgaccaacaacaacatccgtattggtcaacatctg
ctgatcccaatttcaaccaaagatgacaaggcttacgcactcagtgccagcaatcgtcta
gcgaaaacccaagcgaaagctcgtggtaaatacaaattgactcatactgtcgccaaaggc
gatagtttgtggagtatcgctaaagccaataaggtgtcacacacttcactggcgaaatgg
aatggcatgggcccacgtgacacgctacgtattggccaagatttggtgatctggaaaaac
agcgctgatggtgctgtgatccgcactgtcttttatcaagttcgtagcggtgataccgtg
agtggcattgcgaataaattcaaagtaaaaaccaccgatgtcgtgaagtggaatagtctt
gagaagaaaaagtacttaaagccaggtcaaaaactgaagctgtatgtcgacgtgactaag
gtgagtgtatga
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