Vibrio scophthalmi: VSVS12_01197
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Entry
VSVS12_01197 CDS
T04650
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
vsc
Vibrio scophthalmi
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsc03032
]
VSVS12_01197
03036 Chromosome and associated proteins [BR:
vsc03036
]
VSVS12_01197
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_01197
DNA replication proteins [BR:
vsc03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VSVS12_01197
Chromosome and associated proteins [BR:
vsc03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VSVS12_01197
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VSVS12_01197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
DUF4777
HAAS
Glycos_trans_3N
Coagulin
Motif
Other DBs
NCBI-ProteinID:
ANS84964
UniProt:
A0A1B1NN11
LinkDB
All DBs
Position
1:1254754..1255035
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AA seq
93 aa
AA seq
DB search
MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLEKGDRIEIRGFGSFSLHYREPRT
GRNPKTGDKVELEGKYVPHFKPGKELRERVNLG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgactaagtctgaattgattgaaagactttgcgctgagcaaacacatctttcagcaaaa
gaagtcgaagatgcggtaaaagacattcttgaacatatggcatcaacgcttgaaaagggc
gatcgcatcgagattcgcggttttggtagtttctcacttcactaccgtgagccacgtaca
ggtcgtaaccctaagaccggcgataaagttgaattagaaggtaaatacgtacctcacttc
aaaccaggcaaagaattgcgtgaacgagtgaacctaggttaa
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