Vibrio scophthalmi: VSVS12_01359
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Entry
VSVS12_01359 CDS
T04650
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VSVS12_01359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_01359
Enzymes [BR:
vsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSVS12_01359
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VSVS12_01359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
T1R_D3-like
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANS85126
LinkDB
All DBs
Position
1:complement(1442338..1445802)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSKPSLLNLVNPQGVGDKKFVGNLPGSALALAIAELAEQHAGHTLLATPDPQSALKLQQE
LEQFTEHTVRLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQSDGITIVPINTLLQRQS
PRDFLMQHTLMVKTGDLFSLEKLRLQLEKSGYRHVDQVFGPGEYASRGSIIDLFPMGSND
PYRIDFFDDEIDTIRTFDPENQRSITDVSEIRLLPAHEFPTSESAIEDFRIRWRQRFEAR
REPESVYMQVSKGTWPAGIEYWQPLFFEQTETLFDYIPDNSQLIAVGDIESAIDQFLTDV
DYRYDQRKVDPLRPLLPPHELWLKKDELFAQFKALPQALLSVDTVKRKQGRQNPDITALP
ELTVQHQNKEPMATLRQFSEGYNGKIIFSVESEGRREALLELLQRIKLRPIECASFCEAL
AHKEKFTLVIGAAEHGFLYGDNQIAFICESDLLGDRVIQRRRKDRKATNSDAVIRNLAEL
KPGQPVVHIDHGIGRYLGLQTLEAGGMITEYVTLEYQNEAKLYVPVASLNLISRYSGGAE
DSAPLHKLGGEAWTKARRKAAEKVRDVAAELLDVYAKRELKPGFKFALDRGQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKLVLQDIADGKVDLVVGTHKLLSND
IVFKDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREDTVIREAILREIMRGGQIYFLHNQVETIDKVAEDLEKLVPEAR
VTVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALREGKEPSLDDLLREQTEVEMRIPALLPEDYI
PDVNTRLSMYKQIASVADKDDLNNLKVELIDRFGLLPDAAKNLLSVAELKLAAAQLKVKK
IEAHDKGGYIEFYPDADINPMYLVRLLQSQPQKFAMEGPTKFKFIVSLADRRQRIQFVTD
MLAEFQQNLLPKQD
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaccatcattacttaaccttgtaaatccacaaggtgtcggcgataagaaattc
gttggcaatttaccaggctcagcactggctcttgccattgctgagttagcagagcaacac
gctggtcatacgttgttagcaacgccagatccacaaagtgcactaaaactgcaacaagag
ttggagcagttcactgagcataccgtgcgtctattccctgactgggaaaccctgccatac
gataatttttctcctcaccaagagatcatttccgatcgtatcgcaaggctctatcaattg
ccgacccaaagtgacggcatcaccatcgtaccgattaatactctgctgcaacgccaatct
ccacgcgatttcttaatgcagcacacattaatggtaaaaaccggtgatctattctcactt
gaaaagctgcgtctacagttagaaaaatcggggtaccgccatgtcgatcaagtctttggt
ccgggtgagtatgctagccgtggttcaatcatcgatttgttcccgatggggtcaaatgat
ccctaccgcatcgacttcttcgatgacgaaattgacaccattcgcacctttgatccagag
aaccaacgttccattactgacgttagtgaaattcgcttgctacctgctcatgaatttccg
acctcagaaagcgcaattgaagattttcgcattcgttggcgtcaacgctttgaagcgcgc
cgcgaacctgaatctgtctacatgcaggttagcaaaggcacttggcctgcaggcatcgaa
tattggcaaccgttgttctttgagcaaacggaaactctgtttgactatatccccgacaac
agtcagttaattgcagttggcgatattgaatccgcgatcgatcaattccttaccgatgtg
gactatcgctacgatcaacgcaaagtcgatccattacgtccattacttccgcctcatgaa
ttgtggctgaaaaaggacgagttattcgcccaatttaaagcactgccacaagcactgctt
agcgttgacacggttaagagaaaacaaggtcgccaaaatccagacataacggcactacct
gaactcaccgttcaacatcaaaataaagagccaatggccacgctgcgtcaatttagtgaa
ggctacaacggtaagattatcttctcggtagaatctgaaggtcgccgcgaagcgttgtta
gagctactacagcgtatcaagctgcgcccgattgaatgtgccagcttctgcgaggctctc
gcacacaaagagaaattcaccctcgtcattggtgctgccgaacatggcttcctttatggc
gacaatcaaattgccttcatctgtgaaagtgatttgctgggtgatcgcgttatccagcgc
cgccgaaaagatcgcaaagcgaccaatagcgatgcagttattcgcaatcttgcggaacta
aaacccggccaaccggtggtacatattgatcacggtatcggccgctatcttggtttacaa
acgcttgaagcgggcggcatgatcaccgaatacgtgacgcttgagtatcaaaacgaagcc
aaactgtacgttcctgttgcatcactgaatctaattagccgttattccggtggtgctgaa
gacagcgcacctctgcataaactaggtggagaagcgtggaccaaagcgcgccgcaaagca
gcagaaaaagtgcgtgatgtagcggccgaactgctcgatgtgtatgccaaacgcgaactc
aagcctggcttcaagtttgcgctagatcgaggccaatacgcgacctttaaagccggcttc
ccctttgaggagactgatgaccaaagcatggccatcaatgctgtgatgtcagacatgtgc
caagccaaagccatggaccgcttggtgtgtggtgatgttggttttggtaaaaccgaagtc
gcaatgcgtgcggcgtttgtcgccaccgacaacggcaaacaagtcgcggtactcgtgccg
accacactgcttgcccaacagcactttgagaacttccgtgaccgatttgccaatttacca
attcgcgtcgaagtactgtcgcgctttaaaagcgccaaagagcaaaagctggtgttgcaa
gacattgcggatggcaaagtcgaccttgtggttggtacacacaagctactgtccaatgac
atcgtctttaaagatcttggcctgctgattgttgacgaagaacaccgctttggtgttcgc
cagaaagagaaaatgaaagcgatgcgtgcggatgtcgacattctgacgttaactgcaacg
ccaatcccacgtacgcttaacatggcgatgagtggcatgcgcgatctctcgatcatcgcc
acaccgcctgcacgccgtttagcgatcaaaacctttgtccgtcaacgtgaagacactgtg
atccgcgaagctattttgcgtgaaattatgcgtggtggccaaatctacttcttacacaat
caagtggaaaccatcgataaggtcgccgaggatttagagaagttagtcccagaagctcgt
gtcaccgtcgctcacggacaaatgcgcgaacgtgaactagaaaaagtgatgaacgatttc
tatcaccaacgctttaacttgctcgtatgtaccaccattatcgagaccgggattgatgta
ccaaccgccaacaccatcattatggatcgcgcggacaaccttggtttggcgcagttacac
caattacgcggtcgtgtaggacgttcacaccaccaagcgtatgcctatttgctcacgcct
catcctaaagcgatgaccaaagacgcaatcaagcgacttgatgcgattgcttcattggaa
gacttgggggctggctttactctggcaacccacgatttagaaattcgtggtgcgggtgaa
ctgcttggtgacgaacaaagcggtcaaatccaatcggtcggttttaccctctacatggaa
atgctggagcaagcggtagaagcactgcgtgaaggcaaagagccgtcactcgatgactta
ctgcgtgagcaaacagaagttgaaatgcgcatcccagccttgctgcctgaagactatatc
ccggatgtgaacacacgcttgtcaatgtataagcaaatcgcaagtgtggctgataaagat
gatctcaacaacttaaaggtagaattgattgatcgctttggtttactacccgatgcggcg
aaaaacctactctccgttgctgagcttaaactggccgcagcgcaactaaaagtgaagaaa
attgaagctcatgacaagggcggctatattgagttctatcctgatgctgacataaatccc
atgtatttggttagactgttacaatctcagccacagaaattcgcaatggaaggaccaact
aagttcaagtttattgtatcattagcggatagacggcaaagaattcaatttgttactgac
atgctggctgaattccagcaaaatttattaccaaaacaagattag
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integrated database retrieval system
