Vibrio scophthalmi: VSVS12_02228
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Entry
VSVS12_02228 CDS
T04650
Name
(GenBank) putative HTH-type transcriptional regulator YraN
KO
K10918
LysR family transcriptional regulator, transcriptional activator AphB
Organism
vsc
Vibrio scophthalmi
Pathway
vsc05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VSVS12_02228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vsc03000
]
VSVS12_02228
Transcription factors [BR:
vsc03000
]
Prokaryotic type
Helix-turn-helix
LysR family
VSVS12_02228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
Motif
Other DBs
NCBI-ProteinID:
ANS85989
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All DBs
Position
1:2443887..2444816
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AA seq
309 aa
AA seq
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MRDVQYKLTQFVKKCVQMMKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDA
LNLRLLNRHARKLSLTEAGERFYGECSPLLQRLSFVTEEISDDCRGAAGKIRISSPSNLT
KRMMMPMFNAFMQQYPDISIELNTSNHADQLDPTEWDVIFRVGPQRDSSLIARKISAVKD
ILVASPEYLRAHHAPVHAEELHNHSLLKGDPLKKWQLINESGETVINNDSGRFQANALNV
VRSACSDGLGITLMPDVMIREFIEDGSLVQVLQDWSANPRDIYMLYNHKDHLPEKVRLFI
DFVIAYNIH
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcgagatgttcaatataaattaacccaattcgtaaaaaaatgtgtccagatgatgaaa
ttagacgatctaaacctgtttcgactggtagtcgaaaatgggagctatactgcaacatca
cgaaaaaccatgattccggttgcaaccattacgcgacgcattcaagcactagaagatgct
ttgaacctgaggttgcttaatcgccacgcgcgtaagctatcattaacagaagctggtgaa
cgcttctacggtgaatgttcacctttattacagcgtttgtctttcgtcaccgaagagatt
tccgacgactgtcgcggtgcggcaggaaaaattcgaatttcatctccatcaaatctgact
aaacgcatgatgatgccgatgttcaatgccttcatgcagcaatacccagacatcagcatt
gagttgaacaccagcaatcatgccgatcaactcgatccaaccgaatgggatgttattttc
cgtgtcggcccgcagcgtgattcaagcttaatcgcgcgaaaaatcagtgccgtaaaagat
atcttagttgcaagccctgaatatttacgcgctcatcacgcccctgttcatgcagaagaa
ctgcataatcactcgctgttaaaaggcgacccactgaagaagtggcagcttatcaacgaa
agtggcgagactgttatcaacaatgacagtggtcgcttccaagccaatgcgctcaatgtt
gtgcgcagtgcttgttcagatggccttggcattacgctgatgcctgatgtgatgatccgt
gaatttattgaagatggtagcttggtgcaagtgctgcaagattggagtgctaacccacga
gatatctacatgctttataaccacaaagatcatttaccagagaaagtgcgtctatttatc
gattttgtgattgcttacaacatccactaa
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