Vibrio scophthalmi: VSVS12_02461
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Entry
VSVS12_02461 CDS
T04650
Symbol
recC
Name
(GenBank) Exodeoxyribonuclease V
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSVS12_02461 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_02461 (recC)
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSVS12_02461 (recC)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSVS12_02461 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ANS86221
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All DBs
Position
1:complement(2701049..2704570)
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AA seq
1173 aa
AA seq
DB search
MFTVYHSNQVDVLKSLLVELVRIDPLENPFEKEQILVQSPGMSQWLKMALAKEFGVAANI
DFPLPATFIWNMFTQVLADVPQRSAFNKESMSWKLMQILPSLLDQPEFTPLQRYLEDDSD
SSKLYQLAEKIADIFDGYLVYRPEWIAAWESGQVVAEIGDEHPWQPILWQALYDHTLALG
QSPYHRANLYEHFIDSLANYQGRFENLPKRLFVFGITSLPPRYMDALKALGEHIDVHLMF
TNPCRYYWGEVRDRKFLAKLAAKQRKHLVWRDEHSEIEGESEQLKGTIEENLAYDDAAYH
EMVDGESIDLLHTDVVGNSLLASMGKLGRDNMYLLSQLESNEIEAFVDLGRDSLLQQLQA
DILNLEEHQDDQQLTTSQHKQVVRGDDYSLTLHACHSPMREVEVLHDQLLNMFDADPSLK
PRDIIVMVADINAYSPAIQAVFGNAPGERFIPYSISDRSADQESPILAAFMQLLNLANTR
CLASELLELLEIPAILNRFGLSEDEFLQAKIWVEESGIRWGLNPATGTEFDLPATAQNTW
QFGIERMLLGYAMPESAGLFNDGQQSLSPYNEVQGMGAELAGKLAHFIETVSDYRQALAY
AHSIDGWRQLLTTMLDDFFKVELEGEVALKSIRDTLTMLKEQLEDAAYQAELAPSIISQY
LQNKLSGTRVSQRFLAGQVNFCTLMPMRSIPFRAVCLLGMNDGVYPRSMPPEGFDLMNGR
TRAGDRSRRDDDRYLFLEALLSAQQTLYISYVGRSIQDNTERVPSVLVSELMEYCHQNYR
LAEDADLSCDESGDKLLANLHRQHAMVPFSPAAFSDSSSDFSSYSSYAKEWLPAANRQGQ
RSGEFNRQLSDYLADVSYPLDLDLVELQRFWRLPVQYFFNRRLKVMFEPPLPIMPDEEPF
ILDGLESFQIRDALLNQLLSDQLQANSNPDQTVQNFVDQQRAQGKLPVGAFGDIEFDTNR
VQAEQLVEALRFVTSAPVDDVEINLNFDLLGEGKPIVLQGWLTQAYQSGLVRYRSGKIRP
QDYLAAWIDHLAMSAMGVAKRTHMIGYDRKEGVVHLIYPPIEDGDYAKNLLAELVRLFYQ
GMTQPLAYFPKTSLAAIEAGFSRGGAWADDEEKSLKKMAEAFNDGFMSSGEGNNAYIGRI
WPQWNDALAQEVRTLAALVIQAPRLLVKDAHDE
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgtttactgtttatcactccaatcaagtcgatgtgcttaaatctttgctggttgagcta
gtcagaatcgacccgcttgaaaacccatttgaaaaagaacaaattctggttcagagcccg
gggatgtcacagtggctcaaaatggcattagcgaaagaatttggtgtggctgctaatatc
gatttccccctgccagcgacctttatttggaatatgttcactcaggtgttggccgatgtg
ccgcagcgcagtgctttcaataaagagtcgatgagttggaagttgatgcagatcttacca
agcttgttagatcagcctgaatttactcccttgcagcgttatttagaagatgacagtgac
agttcaaagctctatcaattagcggaaaaaattgccgatatcttcgatggttacttggtg
tatcgcccagaatggattgccgcttgggagtctggtcaagtggtggctgaaattggtgat
gagcatccgtggcagccaatcttgtggcaagcgctctatgatcacaccctagcacttggt
caatcgccgtatcatcgtgccaacttgtatgagcattttattgatagcttagccaactac
caaggccgctttgagaatctaccgaagcgtctgtttgtattcggtattacttctttaccc
ccgcgttatatggacgcgctaaaagcacttggtgagcatattgatgtgcacttaatgttt
accaacccatgtcgctattattggggtgaagtacgcgatagaaaatttctcgcaaaacta
gcagcaaaacagcgtaaacatctggtgtggcgtgacgagcattctgagattgagggggaa
agcgagcagcttaaaggcacgattgaagagaatctcgcttatgatgacgccgcttatcac
gagatggtggatggcgagagtatcgacctactgcataccgatgtggtgggtaacagctta
ttggcatcaatgggtaaattaggccgcgataacatgtatctgctgtcgcaactcgaatcg
aatgagattgaagcgtttgttgatttgggccgagactccttgttacagcaattgcaggcc
gatatcctcaatcttgaagagcatcaagatgatcaacagttaaccacaagtcagcataaa
caagtggtgcgtggtgatgactactcattaactctgcacgcctgccatagcccaatgcgc
gaggtggaagtgctgcatgatcagttgctcaatatgtttgatgctgatccaagcttaaaa
ccgcgcgatattatcgtgatggtcgccgacatcaatgcctatagtcctgcgattcaagcg
gtgtttggtaatgcgccgggcgagcgatttatcccatactcgatttctgaccgtagcgcc
gatcaagaaagcccaatcctagcggcgtttatgcagctactcaatttagccaatactcgt
tgcttagcctccgagctattagagttgctggaaattccggccatccttaatcgttttggt
ttgagtgaggatgaattcctacaagccaaaatttgggtggaagagtcaggtattcgctgg
ggattaaatcctgctacgggtactgagtttgatctgccagccacagcgcaaaacacttgg
caatttggcatagaacgtatgctgcttggctatgcgatgccggaatcagccggattgttt
aatgatggtcaacagtcgttatccccttacaacgaagtgcaggggatgggggcggagctt
gctggtaagctggcgcactttattgagacggtcagtgactatcgtcaagcgcttgcgtac
gcccacagtattgatggttggcgtcaattattaaccacgatgctggatgatttctttaaa
gtagaattagaaggtgaagtggcactaaaatcgattcgcgacacgctcactatgctcaaa
gagcagttagaagatgccgcttatcaggccgaacttgcgccaagtattatttctcaatac
ctacaaaacaaactttctggtacccgggttagtcagcgcttcttagctggacaagtgaac
ttctgtaccttgatgccaatgcgctctatcccatttagagcggtatgcttgctggggatg
aacgacggcgtttacccgcgttcgatgccacctgaagggtttgatttgatgaatgggcgc
actcgtgcgggagatcgttctcgccgtgatgatgaccgttatctgttcttagaggcgctc
ttatcggcgcagcaaactttatatatcagctacgttggccgttcgattcaagataacact
gagcgcgtgccatcggtgctggtgtctgaattgatggaatattgccaccaaaactaccgt
ttggcggaagatgcggatctgagctgtgatgaatctggcgataagctgctagcgaactta
catcgccaacatgcgatggtgccatttagtcctgctgcgtttagtgattcatcgagtgac
ttttctagctacagcagttatgccaaagagtggttgcctgcggcgaaccgtcaaggtcag
cgtagtggtgagttcaatcgtcaattgagtgattatctggccgatgtcagctatccactg
gatcttgatttggttgaactgcagcgtttttggcgcttaccagtgcagtatttcttcaac
cgtcgcttaaaagtgatgtttgaaccgcctttgccaattatgcccgatgaagagccgttt
attctcgatggtttagagagtttccagatccgtgatgcgctgctaaaccaactgctgagc
gatcaattgcaagccaatagtaatccagatcaaacggtgcaaaactttgtcgatcagcaa
cgcgcccaaggcaagttaccggtgggggcatttggcgatattgagtttgataccaaccga
gtgcaagctgagcaattggtagaagcactgcgttttgtcactagtgcgccggtggatgat
gttgagattaatcttaattttgacctgctgggtgaaggcaaaccgatcgttttacaaggt
tggctcacccaagcttaccaatctggtttagtacgttatcgtagtggcaaaattcgcccg
caagattatttggctgcgtggattgaccatttggcgatgtcggcgatgggcgtggcaaaa
cgtactcacatgattggttatgatcgtaaagagggcgtcgtacatcttatttacccgccg
atcgaagatggtgattatgccaagaatctgttggccgaactggtgcgattattctatcaa
ggtatgactcagccgttggcgtacttccctaaaacatcgttggcagcgattgaagcaggc
tttagtcgcggcggcgcttgggcagatgatgaagaaaagtcgctcaaaaaaatggccgaa
gcgtttaacgacggctttatgagtagcggtgaaggcaacaatgcttacattggtcgtatt
tggccacagtggaatgatgctttagcgcaagaagttcggaccttggcggcgttagtgatt
caagcaccaagattattggtcaaagacgcgcatgatgaataa
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