Vibrio scophthalmi: VSVS12_02615
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Entry
VSVS12_02615 CDS
T04650
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSVS12_02615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsc03019
]
VSVS12_02615
03016 Transfer RNA biogenesis [BR:
vsc03016
]
VSVS12_02615
Enzymes [BR:
vsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VSVS12_02615
Messenger RNA biogenesis [BR:
vsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VSVS12_02615
Transfer RNA biogenesis [BR:
vsc03016
]
Prokaryotic type
tRNA degradation factors
VSVS12_02615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
DUF3016
KH-I_KHDC4-BBP
S1_2
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
ANS86371
UniProt:
A0A1B1NRV6
LinkDB
All DBs
Position
1:complement(2875746..2877881)
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AA seq
711 aa
AA seq
DB search
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQIIATVMS
VNPNVQPDMVTMIGTSAALAISGLPFNGPIGAARVGHIDGQLVLNPSMTELATSKLDLVV
SGTENAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWNWEAPAVN
TELKALVADLAETRLADAYQITEKMARYEQVGAIKNDVVAALLAQDENLAEREIRGMLGS
LEKKVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAIVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVE
EFPYTIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGAREEISEFAPRIYMMKISSEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEQPAEAAAEAKPAADAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacggttactctagaa
actggcgtaatcgctcgtcaagctactgctgctgttatggttactatggacgatactgcg
gtattcgtatctgtagtaggtaaaaaagaagcagttgaaggccaagacttcttcccgcta
actgtaaactaccaagagcgtacttacgctgcaggtaaaatccctggtggtttcttcaag
cgtgaaggtcgtccttctgaaggtgaaactctgactgctcgtctaatcgaccgtccgatt
cgcccactattcccatctgcattcaaaaacgaagtgcaaatcatcgcaactgttatgtct
gtgaaccctaacgttcaaccagacatggtaacaatgatcggtacttctgctgcacttgct
atctctggtctaccattcaatggtcctatcggtgctgcacgtgtaggtcacatcgatggt
caactagtgcttaacccaagcatgactgaacttgctacgtctaaactagacctagtggtt
tctggtactgaaaacgcagtactaatggttgaatcagaagctgacaacctaactgaagaa
gaaatgctttctgcagtagtatttggtcacgaacaacaacaagttgttatcaatgcaatc
aacgagttcgcagctgaagttgcaactccagcatggaactgggaagcgccagcagtaaac
actgagcttaaagctcttgttgctgatctcgctgaaacccgtcttgctgatgcataccaa
atcactgagaaaatggctcgttacgagcaagttggcgcaatcaagaacgacgttgttgct
gcccttctagcacaagacgaaaacctagctgagcgcgaaatccgcggcatgcttggttct
ctagagaagaaagtagtacgtagccgcatcatcgctggccacccacgtatcgatggtcgt
gaaaaagacatggttcgtgcactagacgtacgtactggtgtacttccacgtactcacggt
tcttcactgtttactcgtggcgaaacgcaagcgatcgttactgcgactctaggtacgcaa
cgtgacgcgcaaatcatcgacgaactaacgggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtaggcgaaactggttttgtaggttctcctaagcgtcgt
gaaatcggccacggtaaactggctaaacgtggtattgctgcagtaatgccttctgttgaa
gaattcccatacaccatccgtgttgtatctgaaatcactgaatctaacggttcatcttca
atggcttctgtatgtggtacttctctagcacttatggatgctggtgtgccaatcaaagct
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgatttcgtagttctttct
gacatccttggtgacgaagatcacctaggtgacatggactttaaagtagcaggtactaac
gctggtattactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgctcttaaccaagcgcaaggtgcacgtaagcacatcctttctgtaatggatgaa
gctatctctggtgctcgtgaagagatctctgaattcgctcctcgtatttacatgatgaag
atcagctctgagaagatcaaagatgttatcggtaaaggcggcgcagttatccgtgctcta
actgaagagacgggtacaacaatcgaaatcgaagacgacggtactattaagattgcagca
actgaaggcgctgcggctaaagaagcgattcgtcgtatcgaagagatcactgctgaagtt
gaagtaggtcgtatctacactggtaaagttgcacgtctagcggacttcggtgcgtttgta
acaattcttccaggtaaagatggtctagtacacatctctcaaatcgctgacaagcgtgtt
gagaaagtgtctgattacctagctgaaggccaagaagttcaagttaaagtacttgaaatc
gaccgccaaggccgtgtacgtctaagcatgaaagaagcagtagaacagccagcagaagct
gcggctgaagcgaaaccagcagctgacgctgagtaa
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