Vibrio scophthalmi: VSVS12_02780
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Entry
VSVS12_02780 CDS
T04650
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vsc
Vibrio scophthalmi
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsc03016
]
VSVS12_02780 (truD)
Enzymes [BR:
vsc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
VSVS12_02780 (truD)
Transfer RNA biogenesis [BR:
vsc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VSVS12_02780 (truD)
Prokaryotic type
VSVS12_02780 (truD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ANS86520
LinkDB
All DBs
Position
1:complement(3041717..3042811)
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AA seq
364 aa
AA seq
DB search
MELIMSDILSPLAYLTGKPTAQGKLKAQPEHFQVFENLGFEFAGQGEHLMVRIRKTGENT
AFVANELAKACGVKSKDVSWSGLKDRHAVTEQWLSVHLPKGETPDFSAFLAQYPQIEIIK
TDRHNKKLRPGDHISNSFVVTMSEVTDVADVVRRLETIMETGVPNYFGSQRFGHKGNNLS
EARRWGRNNVRTKDQNKRSLFLSSARSWIFNKIVSARIEQNIFTQIILGDIALSDVKMSD
EETGVTNAKPILVTADNFASIGEAVANNDMQISAAMAGDNALPTQDDALLLEQPCLDSEP
DLMALIRGNRMRHDRRSIALKAQDLTWSVEGDNITLSFSLDCGCFATSIVRELIEEIEVE
RVYS
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatcatgtcagatattctatctccattggcttacctaacgggtaaaccaacc
gctcaaggcaagctaaaagcacaacctgagcacttccaagttttcgaaaacctcggtttt
gagtttgccggtcaaggtgaacacctgatggtacgtattcgtaaaacgggtgaaaacact
gcatttgtggccaatgaacttgccaaagcatgcggcgtgaagtcaaaagatgtcagctgg
tctggcttgaaagatcgccacgcggtgacggagcaatggttgagtgtacatctgccaaaa
ggtgaaactccggatttttctgctttcttagcgcagtacccacagatcgaaattattaag
accgatcgtcataataaaaagctacgtcctggtgatcatatcagcaacagctttgttgtg
acgatgtctgaagtgacggatgttgctgatgtcgtacgccgcttggaaacgattatggaa
acgggcgtgccgaactactttggcagtcagcgctttggtcacaaaggtaataacctcagt
gaagctcgtcgttgggggcgtaataacgttcgtaccaaagaccaaaacaagcgcagcctg
tttctttccagtgctcgttcatggatttttaataaaatcgtgtctgcgcgtattgagcaa
aacatctttacacaaattatcttgggcgatatcgcgctgagtgacgtgaagatgagtgat
gaagagacgggtgtaactaatgctaagccgatccttgtcacggccgataattttgccagc
atcggtgaagccgttgctaataacgatatgcagatcagtgcggcgatggctggtgacaat
gcattgccaacccaagacgatgcattgctattagagcaaccttgcctagattcagagcct
gatttgatggcattgattcgtggtaaccgtatgcgccatgatcgccgtagtattgcactt
aaagcgcaagacctgacatggtcggtggaaggtgacaatattaccttaagctttagtctt
gattgtggctgttttgctacatctattgttcgtgaactgattgaagagattgaagtggag
cgtgtttattcatga
DBGET
integrated database retrieval system
