Vibrio scophthalmi: VSVS12_02793
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Entry
VSVS12_02793 CDS
T04650
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vsc
Vibrio scophthalmi
Pathway
vsc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VSVS12_02793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsc03021
]
VSVS12_02793
Transcription machinery [BR:
vsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VSVS12_02793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ANS86533
UniProt:
A0A1B1NS81
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All DBs
Position
1:3052111..3053967
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AA seq
618 aa
AA seq
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MDQNPQSQLKQLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIRVVETAP
DADDLALNDDDAITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQNAVAEYPGTIPYILEQFDRIQAEELRLTDLITGFVDPDADETAAPTA
THIGSELTETDLKDEDDDSDDDSDDSDEEEAEEDTGIDPELALEKFTALRNTFQNHQLAV
NEHGHDSAQAQDAHALVIDVFKEFRLTPKQFDYLVEELRTSMERVRTQERLIMKATVEYG
KMPKKSFITLFTGNESSDAWLDEVLASDKPYADKIRQSEDDIRRSILKLKIIEEETSLTV
QSIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA
TATSLRAATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSETLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaaacaacttgtcattaaaggcaaggaacaaggc
tatctgacctacgcagaagttaacgaccacctgcctgcagaaatcgtggattctgagcag
gttgaagacatcattcagatgattaatgacatgggtattcgagtagtagaaactgctccg
gatgctgatgatcttgcgctgaacgatgatgacgccatcaccgatgaagatgcagcagaa
gctgcagcagcggcactttcaagcgttgaaagtgaaattggccgcacaaccgacccagtg
cgcatgtacatgcgcgaaatgggtactgttgagctgctaacgcgcgaaggtgaaatcgat
atcgcgaagcgtatcgaagatggtatcaaccaagttcaaaacgccgttgcagaataccca
ggtacaattccttacattcttgaacagttcgaccgtattcaagctgaagagctacgtctg
actgacctgatcacgggctttgttgatcctgatgcagatgaaactgcagcgccaaccgcg
acacacatcggttctgaactcacagaaacagatcttaaagacgaagatgatgattctgac
gacgacagtgacgacagcgatgaagaagaagctgaagaagatactggtattgatcctgag
cttgcgcttgagaaatttaccgctctacgcaacaccttccaaaaccatcagctagcggtt
aacgaacacggtcatgacagcgcacaagcacaagatgctcatgcactagtgattgatgtg
tttaaagaattccgtctaacaccgaagcaattcgactacctagttgaagagctacgtact
tcaatggaacgcgttcgtactcaagaacgtttgatcatgaaggcaacggttgaatacggc
aaaatgccgaagaaatcattcatcacgctatttactggcaatgagtcaagcgatgcttgg
ctagatgaagttttggcatcagataagccatacgcagataaaattcgccaaagcgaagat
gacatccgtcgttctatcctgaagcttaaaatcattgaagaagagacttctttaacggtt
caaagcatcaaagatatcagccgtcgtatgtctatcggtgaagcgaaagctcgtcgtgcg
aagaaagagatggttgaggcgaacttacgtctagttatctcgattgctaagaaatacacc
aaccgtggtctacagttcttggatctgatccaagaaggtaacattggtttgatgaaagcg
gttgataaatttgaataccgtcgtggttacaaattctcgacttacgcgacttggtggatt
cgtcaggcaatcactcgttcgattgcagaccaagcccgtacgatccgtattccggttcac
atgatcgaaacgatcaacaaactgaaccgcatctctcgtcaaatgctacaagagatgggt
cgtgagccgctaccggaagaacttgctgaacgcatgcaaatgccagaagacaagatccgt
aaagtactgaagatcgctaaagagccaatctcaatggaaacacctatcggtgatgacgaa
gattcgcacctaggtgacttcatcgaggatactacgctagaacttcctcttgattcagcg
acggcaactagcctgcgcgctgcaaccaaagatgttcttgcgggtctaacacctcgtgaa
gcgaaagtactacgcatgcgttttggtatcgatatgaacactgaccacactctagaagaa
gtgggtaagcagttcgacgtgacgcgtgaacgtatccgtcagatcgaagcaaaagcacta
cgtaaacttcgtcatccaagccgctcagaaaccttgcgcagcttcctagacgagtaa
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