Vibrio scophthalmi: VSVS12_03073
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Entry
VSVS12_03073 CDS
T04650
Name
(GenBank) DNA-3-methyladenine glycosylase II
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VSVS12_03073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vsc03000
]
VSVS12_03073
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_03073
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
VSVS12_03073
Transcription factors [BR:
vsc03000
]
Prokaryotic type
Helix-turn-helix
AraC family
VSVS12_03073
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VSVS12_03073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF6233
HTH_3
Pcc1
Motif
Other DBs
NCBI-ProteinID:
ANS86782
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All DBs
Position
2:complement(57706..59091)
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AA seq
461 aa
AA seq
DB search
MPDIDSMVHSQGQLHRQYQRARQARDARFDGRFFVAVKTTKIFCRPICPANLPKEENVEY
FDDAAQALHAGYRPCLRCRPDSAPNSWAWQGTATSFERALKLIELGELQHTTLDKLAERL
GITDRYLRQLFQQRLGMSPKQYALYHQLMFAKQLLHNSNMSITDIGFASGFNSTRRFNDA
FRKALNLTPSALRRASYLPVETHTVELCYRGAFDWQYALNFYRLRAIEGLEWVGESDYQR
RFQLGEASGMLTAHFARKANTVQLEFELSDISQLKALVNQVRRMLDLDADTDVIEQHFHA
LDPHLVRNSGLRIPGVWSAWEAGVRAILGQQVSIKAAINQLNLLVRTIQPQGVTHFPNAK
EIAEADLSFLRMPQSRKETLKRFAELMVVAPDADFSQWLAVKGIGPWTVNYAALRGLSQP
DCFLDGDLVVKKSLQQFPSINATTVAPFGSYATFHLWSHAG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgccagatattgattcaatggtccattcgcaaggccaactgcatcgccaatatcagcgg
gcacgacaagcgcgagatgctcgttttgatggtcggttttttgttgccgtgaaaaccacc
aaaatattttgtcggcccatttgcccggctaatttacccaaagaagaaaacgttgagtat
tttgacgacgcagctcaggcattacatgcgggttatcgaccttgtttacgctgtcgccct
gacagtgcgcctaattcgtgggcatggcaaggaacagcaacatcatttgaacgcgcatta
aagctgattgagttgggggagttacaacataccactttggataaactggctgagaggctt
ggcattaccgatcgatatttaaggcaattgttccagcagcggttgggtatgtcaccgaaa
caatacgctttgtatcatcaattgatgttcgctaagcaactactccacaacagcaatatg
agtatcacagatatcggttttgccagtggttttaatagtacgcgccgctttaatgatgct
tttcgtaaggcgctcaacttaacgccaagtgcactgcgtcgagcttcgtatttgcccgtt
gaaacgcacactgttgagctctgttatcgtggcgcttttgattggcaatatgcgctgaat
ttttaccgcctacgtgccatagaaggtttggagtgggtcggggaaagtgactaccagcgc
cgcttccaacttggtgaagcatcgggaatgttgactgctcattttgctcgcaaagccaac
acggtgcagttagagtttgaattatcggatatcagccagctaaaagctttggtcaatcaa
gttcggcgtatgttggatttggatgcagacaccgatgtgattgaacaacactttcacgct
ttagatcctcatcttgttcgcaattcggggctacgtatcccaggagtatggagtgcctgg
gaagccggtgttcgagccattcttggtcaacaagtctcgatcaaagcggcaatcaatcaa
ctcaatctattggtgcgaaccatacagccacaaggggtcactcatttccccaatgctaaa
gagatcgctgaggccgatttgagctttttgcgtatgccgcaaagccgtaaagagacgttg
aaacgtttcgccgagttaatggtggttgctcccgacgctgacttttctcaatggttggcg
gtgaaagggattgggccttggacggtgaactacgctgcgctgagagggttatctcaacca
gactgttttcttgatggggatttagtggtgaaaaaatcactacaacaatttccctccatc
aatgcgactaccgttgctccatttggtagttacgcgacttttcatttatggagtcatgca
ggatga
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