Vibrio scophthalmi: VSVS12_03515
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Entry
VSVS12_03515 CDS
T04650
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSVS12_03515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsc03019
]
VSVS12_03515
03009 Ribosome biogenesis [BR:
vsc03009
]
VSVS12_03515
Enzymes [BR:
vsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VSVS12_03515
Messenger RNA biogenesis [BR:
vsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSVS12_03515
Ribosome biogenesis [BR:
vsc03009
]
Prokaryotic type
rRNA helicases
VSVS12_03515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
AAA_30
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANS87224
LinkDB
All DBs
Position
2:complement(511079..513103)
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AA seq
674 aa
AA seq
DB search
MTDSVIQFSELALNDAILSALDSMGFVSPTPIQAEAIPHLLAGKDALGKAQTGTGKTAAF
SLPLLNKIDLAQRKPQAVVLAPTRELAIQVAAEMKNLGRNISGLKVLEIYGGTSIVDQMR
ALKNGAHVIVGTPGRVQDLINRDRLHLDEVNTFILDEADEMLNMGFVDDVTAIMEHAPET
AQRVLFSATMPPMLKNIVERFLREPVMVDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKTGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRGNQIRMLRTI
ERVTRSQMEEIQLPMRDQVAEARLIKLGAELEAEKEHKALDKFVELVEKLQESLEIDANT
LAAMLLKRQQGKRPLFYVGEDPMVEAIARDKQRRTERREGGREGGREGGRREGGRSFNTQ
DWDTYQLQVGREQGVQVKDIVGALANELGLVKGSIGAIKLDQGQTYVQLPKAMDSETAGK
LNKLRIRQKEVGAVVCDFNDFREPRGRRDGNRDGGGHRGNREGGFRGNREGGNGGGHRGN
RDGGGYRGNREGGNGGGYRGNREGGNGGGYRGNREGGNGNGGNGERRFDRNRGGDNRGNH
RGERGHGRPARNED
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacagactcagtaattcaatttagtgaattagcactaaacgacgccatcctttcagct
cttgacagcatgggtttcgtttctccaacacctatccaagcagaagcgattcctcacctt
cttgctggcaaagacgcactaggtaaagctcaaactggtactggtaagacagcggcattc
tcgctaccactactaaacaaaatcgatcttgctcaacgtaaaccacaagcagttgttcta
gctcctactcgcgaactagcgatccaagtagcggctgaaatgaagaaccttggtcgtaac
atctctggtcttaaagttcttgagatctacggtggtacttctatcgtggaccaaatgcgt
gctcttaaaaacggcgcacacgtgatcgttggtactcctggtcgtgttcaagaccttatc
aaccgtgaccgtctacaccttgacgaagtaaacactttcatccttgatgaagctgatgaa
atgttgaacatgggttttgtggatgacgtaactgcaatcatggagcacgctcctgaaact
gcacaacgcgttcttttctctgcaactatgcctccaatgctgaaaaacattgttgagcgt
ttcctacgtgaaccagtaatggttgacgttgcaggcaaaaaccacactgtagacaaagta
gaacagcagttctgggttgttaaaggcgttgaaaaagacgaagcaatgtctcgtcttcta
gaaacagaagaaactgacgcatcaatcgtattcgtacgtactcgtcaagataccgagcgt
ctagctgattggctatctgcacgtggcttcaaagctgctgcactgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaaactggcgtaatcgacatcctagta
gcaactgacgttgttgcacgtggtcttgacgttccacgtattactcacgtatttaactac
gacatcccgttcgatgttgaatcatacatccaccgtatcggtcgtactggccgtgctggt
cgtaaaggtaaagcgatcctattggttcgtggcaaccaaatccgtatgcttcgcactatc
gagcgcgtaactcgctcacaaatggaagaaatccaacttccaatgcgtgatcaagtcgct
gaagctcgcctaatcaaactaggtgctgagctagaagcagagaaagaacacaaagcacta
gacaaattcgttgagcttgttgaaaagctacaagaatctctagagatcgatgcgaatact
cttgctgcgatgctacttaagcgtcaacaaggtaagcgtcctctattctacgttggcgaa
gacccaatggtagaagcaattgctcgtgacaagcaacgtcgcactgaacgtcgtgaaggt
ggccgtgaaggtggccgtgaaggtggtcgtcgtgaaggtggtcgtagcttcaacactcaa
gattgggatacttaccaacttcaagtgggccgtgagcaaggcgtacaagttaaagacatc
gttggcgctctagcaaacgaactaggtctagttaaaggctctatcggtgctatcaaacta
gatcaaggccaaacttacgttcagcttcctaaagcaatggattctgaaacagctggcaaa
ctaaacaaactacgtatccgtcagaaagaagttggcgcagtagtttgtgacttcaatgat
ttccgcgagcctcgtggtcgtcgtgacggcaaccgtgatggcggcggtcaccgtggtaac
cgtgaaggcggtttccgtggcaaccgtgaaggtggtaacggcggcggtcatcgtggcaac
cgtgatggtggcggctaccgtggtaaccgtgaaggcggtaatggcggcggctaccgtggc
aaccgtgaaggtggcaacggcggcggttaccgtggcaaccgtgaaggtggcaatggcaat
ggcggtaatggtgagcgtcgtttcgaccgtaaccgtggcggcgacaaccgtggcaaccac
cgtggcgaacgtggccatggtcgcccagctcgcaacgaagactaa
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