Vibrio scophthalmi: VSVS12_03517
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Entry
VSVS12_03517 CDS
T04650
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vsc
Vibrio scophthalmi
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsc03016
]
VSVS12_03517
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VSVS12_03517
Transfer RNA biogenesis [BR:
vsc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VSVS12_03517
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
ANS87226
LinkDB
All DBs
Position
2:513471..515489
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AA seq
672 aa
AA seq
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MFQDNPLLAQLKQQIQEKLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCLHGDRV
KAIIRTDNDRESAEPEELLEHNLARFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVKKGLN
PNDFAEGDWVVAHLVQHPLKGDAGFLVEISKKITDADDKIAPWWVTLAENDLPNSEPAGI
DHWELKDDADLERVDMTHVPFVTIDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYIT
PDSDMDKVARERGFTIYLPGRNIPMLPRDLADDLCSLIEGEVRPALCCTVTVDKDGVIGD
DIHFFAAHIKSHARLVYDHVSDWLEKGESPEWQPNDEIAQIVRDLYEFSQARANWRQNNA
VVFPDRPDYRFELSEDNDVVAIHADMRRTANRLVEESMITANICAGKTLRANFECGVFNT
HAGFKPEKIADVVALVNPEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAY
SEMGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHVLGKEPVQTADETVGEELAL
HRKHHNMAERKVGDWLYARTLAEEPSKETKFVGEIFDINRAGMRIRLLENGAAAFIPSSL
IMSNKERIECNGEQGTISIDKQLEFRLGDTLEVVLTDVSQENRNIVAKPTQVFAELVVEK
QDDTTATDAPAE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataatccgctactggctcagcttaaacagcaaatccaagaaaagctaccg
aaaaaagaaggcactattaaagcaactgaaaaaggctttggcttcttagaagtagatagc
aaaaccagcttctttatcccgcctccatatatgaagaagtgtctgcatggcgatcgagtg
aaagcgatcattcgtactgataacgatcgcgaatcggcagagccagaagagctgttggaa
cacaacctcgctcgctttattggtcgtgttaaaatgtttaagggcaaattgaacgtaaca
ccggatcatccgcaactgaaaaaacagtcactaaaagcaaaagtaaagaagggtttaaac
ccgaacgattttgctgaaggtgattgggtagttgctcacctcgtgcaacacccgcttaaa
ggcgatgctggtttcttggttgagatttcgaaaaaaatcacagatgccgacgataaaatt
gcgccttggtgggtaacgctggcggaaaacgatctgccgaacagcgagcctgcgggtatt
gatcattgggaattgaaagacgatgcagatttagagcgcgtcgatatgacccatgttcca
ttcgtgactatcgatggtcaatcaaccaaagatatggacgatgcgttatacgcgaagaaa
aatgcgaatggtgattttgaattaacgattgcgattgccgatcctactgcctacatcacg
ccggatagtgatatggacaaggtggctcgtgaacgtggtttcactatctatttgccaggc
cgtaacatcccaatgttacctcgcgatcttgccgatgatctttgctctctgattgaggga
gaagttcgtccagcactttgctgtactgtgacggtcgataaagatggtgtgattggtgat
gatatccacttctttgctgcacacattaaatcgcacgcacgtttagtttacgatcatgtt
tcagattggttggaaaaaggcgagtcgccagaatggcaaccaaatgatgagatcgcacaa
atcgtacgtgatttgtatgaattctctcaagcacgcgctaactggcgtcaaaataatgca
gtggttttccctgaccgtcctgattaccgttttgaattgagtgaagataatgatgttgtc
gcgattcatgcggatatgcgtcgtactgcaaatcgtttagttgaagagtcaatgatcacc
gccaacatctgtgcgggtaaaacattgcgtgctaactttgaatgcggtgttttcaataca
catgctggcttcaagcctgaaaaaattgccgatgtggttgcgctagtgaaccctgaaggt
gaattaccgtttactgctgaatccattgcaactctagaaggttttgccgcgctacgtcgt
tggttaggtcagcaagatacgagttatctcgataaccgtatccgcaaagcgcaagcatac
agtgagatgggtaatcagccactaccgcactatgcgatgggtttagatatctacgcgacg
tggacgtctccaatccgtaaatacggcgatatgattaaccatcgtatgctaaaagcgcat
gtactaggcaaagaaccagtgcaaaccgcagatgaaacagtgggcgaagagcttgctcta
catcgtaagcatcacaatatggctgaacgtaaagtgggtgattggctgtatgcacgcacg
ttggctgaagagccaagcaaagagaccaaattcgttggtgaaatctttgatattaaccgt
gcgggtatgcgtattcgtttacttgaaaatggcgccgctgcctttattccaagttcattg
attatgtctaataaagaacgtatcgagtgcaacggcgagcaaggtacgatttcaatcgat
aagcaacttgaattccgtcttggcgacacgcttgaagtggtattgacagacgtgagtcaa
gaaaaccgcaacatcgtagcgaagccaacacaagtgtttgcggagttggttgttgagaag
caagatgacacgacggcaacagatgctcctgctgagtaa
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