Vibrio scophthalmi: VSVS12_03774
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Entry
VSVS12_03774 CDS
T04650
Name
(GenBank) putative signaling protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VSVS12_03774
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VSVS12_03774
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF
GAF_2
AbiEii
Motif
Other DBs
NCBI-ProteinID:
ANS87474
LinkDB
All DBs
Position
2:complement(839829..841727)
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AA seq
632 aa
AA seq
DB search
MSKINTNKLVIPDEMTQSWQNIVNLLAEIVSAPAALIMRIHPDVIEVVSSNNNAEHPYAT
GDIETLGQGLYCEYVIEQQQALEVPNALADPNWDSNPDIKLGMVAYCGFPINWPNGKPFG
TICVLDSQTKSLTTTYKDLLQNFRDAIQAQLVTLYQNEKLKLLNVELKSRVSTRTQDLVD
LNFSLNMEIDKRRAAEQKILYHQKHDLGTGFLNRNSLEFEADQMIKAHSEQPEFQAAAIH
IGFTNGKLLQTKHGYGVWENILVKFREQLGDLNQFHVKTARPTSTELVLLVQSNRLSEHI
NDLCQQLLTVSHSEFEVDGENHHLHSYIGISTTDDAASGHLLLKYASGAMHSCKDSGHKY
SFHSHDISALQTDINQLESYLLQAVRSEDLLLYFQPKVSPLNHKWTGAEALLRWRHPILG
DISNETLIHMAEQNGLIFEVGTFVLRSAIQKASEWATHVKDFKIAVNISAVQLKNPHFAE
QIEDLLIAYQLPPEYLELEVTESSLIADEVMAKNSLLALHKLGVTLSLDDFGTGYSSFNY
LKKFPFDAIKVDKSFIQQLDNCQEDKEIVRSIIAVAKKLNLSVTVEGIESRLHEEFIIEE
GCEFGQGFYYGKPMPCDEFEINLLSQNYFQAS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaattaatactaacaaattagtcatacccgatgagatgactcaaagttggcaa
aacattgtcaacttgcttgctgagatcgtttcagcaccagctgccttaataatgagaatt
catcccgatgtcatcgaagtcgtttcgagcaataataacgccgagcatccttatgctact
ggtgatatcgaaacactcggccaaggtctgtactgtgagtatgtcattgaacaacagcaa
gcacttgaggtgcccaatgcgcttgctgatccgaactgggatagcaatcccgatatcaaa
ctgggcatggtcgcctattgcgggttcccaattaactggccgaatggcaagccgtttggc
actatctgcgtgttagattcgcaaacaaaatctctcacaacgacctataaggatctgcta
caaaatttccgtgacgcgattcaagcacaattggtgactctttatcaaaacgaaaaactc
aaactgctcaatgtcgaattgaaatctcgcgtcagtactcgcacgcaagacttagttgac
ctgaatttctcattaaacatggagattgataaacgccgcgctgctgaacaaaaaatcttg
taccatcaaaagcacgatttaggcactggttttctcaatcgaaattcacttgagtttgaa
gcagatcaaatgatcaaagcacactctgaacaacctgaatttcaagctgctgcaatccac
attggttttactaacggtaagttactacaaaccaaacatggatatggcgtgtgggagaac
attctggttaagtttcgcgagcaacttggcgatctcaaccaatttcatgtaaaaacggcg
cggccaacctcaaccgagctggtgctgttagttcagtctaatcgtcttagtgaacacatc
aacgatttatgccaacagttattaaccgtcagccactcagaatttgaagttgatggcgag
aaccatcatctacacagctatattggtatcagcactaccgacgacgcagcttccggacat
ctgttattgaaatacgcatccggagcgatgcattcctgtaaggactctggccataaatac
agtttccactcgcatgatatttcggcattgcagaccgacatcaatcaattagaaagttac
ctgttgcaagcggtacgaagtgaagacctattgctctatttccaaccaaaggtatcgcca
cttaatcacaaatggactggagccgaggccttgttacgttggcgccatccaattcttggc
gatatctccaatgaaacgctgatccatatggcagagcaaaatggccttattttcgaagtg
ggcacatttgttctgcgctcagcgatccaaaaggcgtcagagtgggcaacccatgtgaaa
gattttaaaattgcggtcaacatttctgccgtacaactcaagaacccccacttcgctgaa
caaattgaagatttattgatcgcctatcaactcccaccagaatatttggaattagaagtc
accgaaagtagcttaattgcagacgaagtgatggcaaagaattctttattggcgttacat
aaactgggcgtcacgctctctttggatgattttggcactggctactcttcattcaattac
ctcaaaaaattcccctttgatgctatcaaagtcgataaaagttttattcaacaattggat
aattgccaagaagacaaagaaatcgttcgctccatcattgcggtagcgaaaaaactcaac
ctctccgtcaccgttgagggaatagagagtcggttacatgaagagtttatcatcgaggaa
ggctgtgaattcggccaaggtttctactatggaaaaccaatgccatgcgacgaatttgaa
atcaatttattaagtcaaaactattttcaagcgagctag
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