Vibrio scophthalmi: VSVS12_03971
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Entry
VSVS12_03971 CDS
T04650
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSVS12_03971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsc03019
]
VSVS12_03971
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_03971
Enzymes [BR:
vsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSVS12_03971
Messenger RNA biogenesis [BR:
vsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSVS12_03971
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VSVS12_03971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
VCIP135_N
Motif
Other DBs
NCBI-ProteinID:
ANS87671
LinkDB
All DBs
Position
2:1052506..1054470
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AA seq
654 aa
AA seq
DB search
MNKEMTYLKTLKDVFAFESLRGGQQQVVEKVLLGRSTAAIFPTGSGKSLCYQLPALHLPH
LTLVISPLLALMKDQLDFLNSKGIAAASIDSSLTYDESREVMRAVKAGETKILMISVERL
KNERFRQFISSVPISLLVVDEAHCISEWGHNFRPDYLKLPVYCAQLNIPQVLLLTATATP
QVIEDMSAKFTIRPDDIVVTGFYRENLDLNVLPCPEVEKPNKLLELINSESPRPTIVYVT
LQNTAESVARYLSEQGAAATAYHAGMHSDVRQKIQNDFMQGKINVIVATIAFGMGIDKSD
IRAVIHYDLPKSVENYSQEIGRAGRDGNTSICSVLANRESLSVLENFVYGDTPDLAAIHA
VIDEIGQTESGQSWEVMLNNLSRDCNIRQLPLKTLLVYLELEKVIEPQYSYFADYRFKTL
APVEQIIAQFDGERRAFIEALFSASAKSRIWHTVDFDALWHTYHAERQRAVAALDYLADK
GWITLESKQMTDVFRLCNAAACKGNNATELSHAIHRLFITKQETEINRVHAMLTLFESQT
CLSHRLANYFADEHAPIQCGHCSVCRGHAAVLPNVNSLPEIELSQLQHWCQPLLNAGKSN
HVEVTVEALARYLCGISTPVTTRLKATKMTGFGKLAPYPFADVKAGCEKVSANV
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagagatgacctatttaaaaacactcaaagatgtgtttgcttttgaaagctta
cgtggcggccaacaacaggtggtggaaaaggttttacttggccgttcaaccgccgctatt
tttcccacaggatccggaaaatcactgtgctaccaactccccgcgctgcatctgccgcat
ttaaccttagtgatctcgccgctattagcgttgatgaaagaccagcttgattttctaaac
agcaaaggcattgctgcggcatcgattgactcttcattaacctatgacgaatcgcgcgaa
gtgatgcgagcggtgaaagcgggagagacgaagatcctgatgatttcagttgagcgcttg
aaaaacgaacgctttcgtcaatttatttcttctgtgcctatttcactcctcgtggtagat
gaagcccactgtatttctgaatgggggcacaattttagacccgactatttaaaacttccg
gtctattgcgcacaacttaatatcccgcaagttttacttcttacggctacggctacccca
caagtcattgaggatatgagcgctaaatttaccatcaggcccgacgatatcgtggtaacc
ggcttttaccgagagaatctcgatctcaatgtactgccatgcccggaagttgagaagcca
aacaagttactcgaactgatcaatagtgaatcgccgcgcccaacgatcgtgtatgtcacc
ttgcagaacacagcagaaagcgtcgctcgttacctcagtgaacaaggtgcagcggccaca
gcctaccacgcaggtatgcacagtgacgtgcggcaaaaaatccaaaacgattttatgcag
ggtaagatcaacgttatcgtggctaccatcgcctttgggatgggtatcgacaaatctgat
attcgcgctgtgattcattacgatttacccaagtcggttgagaactacagccaagaaatt
ggccgagcgggtcgcgatggaaacacgtcgatctgctccgtactcgccaaccgtgagtcg
ttaagcgttctagaaaactttgtctacggtgatacgcccgatttagccgctatacatgcc
gtcattgacgagataggtcaaacagaatctggacagtcatgggaagtgatgcttaataat
ctgtctcgtgactgcaatatccgccagttgcccctcaaaaccttgctggtctatctagag
ctcgaaaaggtgattgaaccgcaatacagctactttgctgattatcgatttaagacattg
gcgcctgtggaacagatcatcgcccaatttgacggtgagcgcagagccttcattgaggcg
ctatttagcgcatcggcaaaatcacgcatctggcataccgtcgacttcgatgcgctgtgg
catacctatcatgccgagcgtcaacgcgcagtcgctgcattggattatcttgctgataaa
ggctggataacactcgaaagcaaacagatgaccgatgtatttcgtctatgtaacgctgcg
gcctgcaaaggaaataatgccactgagttaagtcacgctattcaccgcttgtttatcacc
aaacaagaaacggaaattaaccgtgtccacgcgatgttaactctgtttgaaagccaaact
tgtttaagccatcgactggccaattattttgccgatgagcatgcacccatacagtgtggt
cattgctcagtgtgtcgtgggcatgccgctgtactacccaatgtcaactcgttgccagaa
atagaactctctcagttgcaacattggtgtcagccattgctcaatgccggtaaatccaat
catgtcgaagtcaccgtcgaggcacttgcacgctacctctgcggtatttctacgccagtg
acgacaaggctcaaagccaccaagatgacggggttcggtaagttggctccctacccgttt
gctgacgtaaaagctgggtgtgagaaagtatcggctaacgtataa
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