Vibrio scophthalmi: VSVS12_04279
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Entry
VSVS12_04279 CDS
T04650
Name
(GenBank) putative transcriptional regulatory protein YhcZ
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
vsc
Vibrio scophthalmi
Pathway
vsc05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VSVS12_04279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vsc03000
]
VSVS12_04279
Transcription factors [BR:
vsc03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
VSVS12_04279
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsT-like_REC
GerE
Sigma70_r4_2
DUF8040
Sigma70_r4
HTH_23
HTH_38
HTH_24
HTH_10
HTH_40
Motif
Other DBs
NCBI-ProteinID:
ANS87978
UniProt:
A0A1B1NW95
LinkDB
All DBs
Position
2:complement(1373671..1374342)
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AA seq
223 aa
AA seq
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MSANSTYNITLLSDISMQSKLFKDSLERGIELEVRLVSLDDLSVGAESNNSLLGDYVLID
FNYLNDSNFEIYNQARLSANSNAKEIVINCPKEVASSQLFKWRNLVGVFYVEDDISLLLK
GMEKVMQDEMWLSRKVAQDYIEHFRCANTVTTSQVYANLTKREKEIMRLLGHGASNLQIA
DELFVSENTVKTHLHNIFKKINAKNRLQALLWANNNIALEERV
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaacagtacctataacattaccttgttatctgacatcagcatgcagtcgaag
ttgtttaaggattcattagagcgtggcattgagttagaggtgcgtttagtttctcttgac
gacttgagcgttggagctgagagcaataattcgttactcggtgattatgtattgattgat
tttaattatctcaatgattctaattttgaaatctataatcaagctcggctgtcggccaac
agtaatgcgaaagagatcgtgatcaactgtccgaaagaggtcgcatcatcgcaattgttt
aaatggcgtaatcttgttggtgtgttttatgttgaagatgacattagcctgctgcttaaa
ggtatggaaaaagtcatgcaagatgagatgtggttatcacgtaaggtcgcacaagattat
atcgaacatttccgttgtgcgaatacggtaacgacatcgcaagtgtatgccaacttaacc
aaacgtgagaaagagatcatgcgtttgttaggtcatggggcatctaacctccaaattgcc
gatgagctgtttgtcagtgagaacaccgttaaaacacacttgcacaatatctttaagaaa
ataaacgctaagaatcgactacaagcgttgctatgggcaaacaacaatatcgccttggaa
gagcgcgtgtag
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