Vibrio mediterranei: BSZ05_00300
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Entry
BSZ05_00300 CDS
T04936
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vsh
Vibrio mediterranei
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vsh03009
]
BSZ05_00300
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BSZ05_00300
Ribosome biogenesis [BR:
vsh03009
]
Prokaryotic type
rRNA helicases
BSZ05_00300
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
AAA_19
CMS1
Helicase_C_2
UvrA_inter
AAA_22
Peptidase_A3
Motif
Other DBs
NCBI-ProteinID:
ASI88373
UniProt:
A0A2C9P6X9
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All DBs
Position
1:65349..66731
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AA seq
460 aa
AA seq
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MNTPAFSTLNLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSL
GVLSNLRVKRFRVQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSL
EHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQ
TLLFSATFPEQIQTIAARVMKQPEVVKVESKHDHSSIKQFFYQTNTLEERDNALENLLLT
HQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVAT
DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYRVARIDE
YMDMPIEPSELPAKSSNQPFQAKMVTIQIQGGKKQKLRPGDILGALTGDKTLSGNQIGKI
NMFPMSAYVAVEKAIAKQALGKITNGKMKGRNFRARIIKA
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
ttgaacactccagccttttctaccttaaacttaccatctgaattactcggcacattagac
agtcttggttacgcttccatgacgccaatccaagccgaggcactaccaaaaattttggcg
ggtaaggacgttatcggccaaggaaaaacaggttcaggaaaaaccgcagccttctctctc
ggcgtacttagcaacttaagagtaaagcgcttccgtgtgcagtctcttgttctctgccca
actcgtgagcttgcggaccaagtagcaaaagagattcgcaccctagctcgtggtattcac
aatatcaaagtactaacactgtgtggcggtatgccaatgggaccacaaattggttctctg
gaacacggtgcgcatattctagtgggaacgcctggtcgcatccttgatcatctagaaaaa
ggtcgtatcaacctaagcgaactgaatactctggtacttgatgaagcggaccgtatgcta
gatatgggtttcaaagatgccttagacgctattatcgaccaagctccaaaggagcgacaa
acgctgcttttcagcgctacattccctgagcaaatccaaaccattgctgctcgagttatg
aagcaaccagaagtggtgaaggtagagagtaagcacgatcactcaagcatcaaacagttc
ttctatcaaactaacactctcgaagaacgtgataatgcacttgaaaacttgcttctgact
caccaaccggagtctgctgtggtgttctgtaatactaaaaaagaagttcagaacgttgcg
gatgaactgcatcatcgtggctttagcgtgattgatatccacggtgatttagagcaaaga
gatcgtgaccaagcactcgtacagttcgccaataaaagtgtttctattttagtggcaacg
gatgttgcagctcgtggtctcgatgtcgataacctcgatgcagtattcaactatgatctg
tctcgcgacccagaagtacacgtacatcgcattggtcgtactgggcgcgccggtaataaa
ggtttagcctttagcttctatagcgagaaagagttctatcgtgtagcgcgtatcgatgag
tacatggatatgccgattgaaccaagcgaattgcctgcaaagtcaagcaaccaaccattt
caagcaaaaatggtgacgattcaaattcaaggcggtaagaagcaaaaattgcgccctggt
gatattttgggggcgctaaccggtgataagacactctccggcaatcaaattggtaagatc
aatatgttcccgatgagtgcttatgtggcggtcgagaaggcgatagctaagcaagcgtta
ggtaagattaccaatggcaagatgaagggccgtaacttccgcgctcgaatcatcaaagct
taa
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