Vibrio mediterranei: BSZ05_00835
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Entry
BSZ05_00835 CDS
T04936
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vsh
Vibrio mediterranei
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsh03032
]
BSZ05_00835
03400 DNA repair and recombination proteins [BR:
vsh03400
]
BSZ05_00835
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BSZ05_00835
DNA replication proteins [BR:
vsh03032
]
Prokaryotic type
DNA Topoisomerases
BSZ05_00835
DNA repair and recombination proteins [BR:
vsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BSZ05_00835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ASI88470
LinkDB
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Position
1:complement(181672..184299)
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGKKAAAVSTKGLSAEE
KARIKKEKDRKALIKKMGINPYDDWAANYQVLPGKEKVVAELQKLAKDADHVYLATDLDR
EGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQDPGELNMDGVNAQQARRFLDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDIHADTKTSDKTDF
RLLVAQKAGKAFKPSNETEAQAAVSVLDKATYEVCKREDRPTQSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRGYIDSEFGGAYLPEKPNF
YGSKEGAQEAHEAIRPSDVNVKVDDLSGMEADAHKLYALIWNQFVACQMTPAKYDSTTIS
VKADEYTLKAKGRILKFDGWTRVQRPMGKNEDAILPAVQLGDKLDLVALDPKQHFTKPPA
RYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDDSFT
DLMNYDFTARMEQKLDQIAEGDASWKNVLNEFFEEFTTDLGKAEQDEEHGGMKPNHIVMT
EIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGHVVEQGEFKVKGYDGPTVECDKCGS
EMVLKNGRFGKYMDCTSETCKNTRKILKNGEIAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVSELAKYKERLSPKFHYLADAPTEDPDGRPTVVRFSRKTK
ENYVRSEIDGKPSGWTGLYVDGKWEITDKRKKPKK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagtcactggttatagtggagtcacccgctaaggctaaaaccattaacaaatac
ctcggtaaagactttatcgtgaagtcgagtgtaggtcacgtgcgtgacttaccaactgca
gggcaaagtactggtaaaaaagcagcagctgtctctacaaaaggcttaagtgctgaagaa
aaagcacgtattaaaaaagaaaaagaccgcaaagcgctaattaaaaaaatgggtattaac
ccatatgatgattgggcagcaaactatcaagtattgcctggcaaagaaaaagtagttgcc
gagctacaaaaacttgcaaaagacgctgaccatgtttatctcgcaaccgatttggaccgc
gaaggagaggctatcgcatggcaccttcgtgagatcatcggaggcgatgaagagcgatat
aaacgagtagtatttaacgaaattactaaaaacgcgatccaacaggcattccaagatcct
ggcgaattgaatatggatggcgttaatgcacagcaagcacgacgtttcttagaccgtgtt
gttggttttatggtgtctccgcttctttggaaaaaggttgcacgaggcctatctgctggt
cgagtccagtcagttgcggttaagcttctagtagagcgtgagcgtgaaattaacgcgttt
attccagaagaattttgggatattcatgctgataccaaaacctcggataaaacagatttc
cgtctactagttgctcaaaaagcgggcaaggcgttcaaaccatctaatgaaacagaagcg
caagccgctgtttctgtattggataaggcgacgtacgaagtttgtaaacgtgaagaccgt
ccaactcaaagtaagccatcagcaccttacatcacttctacgctgcagcaggcagcaagt
acgcgcctaggttatggtgttaaaaagaccatgatgttggctcagaggctgtatgaagcg
ggttatatcacctatatgcgtaccgactctaccaacttgagtgcagaagccgttgatgca
gtccgtggctatattgatagtgagtttggtggtgcctatcttcctgaaaaaccaaacttc
tacggaagcaaagaaggtgctcaggaagcgcacgaagcgattcgtccttcagacgttaac
gtgaaagttgatgatctttcaggtatggaagccgacgctcataagctatatgcacttatc
tggaatcagttcgtggcttgtcaaatgacaccagcgaagtacgactccacaacgatcagc
gtgaaagctgatgagtatacgttgaaagcgaagggacgtattcttaagtttgatggttgg
actcgtgttcagcgtccaatgggcaaaaacgaagatgctatccttcctgcagtacagctg
ggcgataagcttgaccttgttgcgttagatcctaagcaacactttaccaagccacctgca
cgttacaccgaagcggctttagttaaagagctagagaaacgtggaattggtcgtccttct
acttatgcatcaatcatctcaacgattcaagatcgtggttatgtaaaagttgaccagcgt
cgtttttatgctgagaagatgggtgagatagtgaccgatcgtcttgatgacagcttcact
gatttgatgaactacgactttactgctcgcatggagcagaagctcgatcaaatcgccgaa
ggtgatgcaagctggaaaaatgtattgaacgaattcttcgaagagttcactactgattta
ggcaaagctgagcaagacgaagagcatggcggtatgaagccaaatcatatcgttatgaca
gaaattgaatgtcctacatgttcacgccctatgggtattcgtactgcttcaactggcgta
ttcttgggctgttccggctatgctttaccacctaaagagcgttgtaaaacgacgattaac
ttgggtgatgaagaaggcattattaacgttcttgaagaagacgtcgaaacggcagctctt
cgtgctaagaaacgttgcccaatttgtgaaacggcaatggatgcttatctgattgatgat
aagcgcaagcttcatgtttgcggtaataacccaaattgtgaaggccatgtggttgaacag
ggcgagtttaaagttaaaggttatgatggcccgacggtcgaatgtgacaagtgtggctct
gaaatggtacttaagaatggccgttttggtaagtacatggactgcaccagtgagacctgt
aaaaacacccgtaagatccttaaaaacggtgaaatagcacctcctaaggaagacccagtt
catttcccagagcttccttgtgaaaactcggatgcttactttgtactgcgtgatggtgca
tcaggcctgtttatggctgctagcaacttccctaaatctcgtgagactcgcgcaccgctt
gtaagtgaacttgcgaaatacaaagaacgtttatcgccgaagttccactatcttgcggat
gcaccaacagaagatccagatggtagaccaacggtagttcgtttcagtcgtaagacgaaa
gagaattatgttcgttctgaaatcgatggtaaaccatcgggttggacggggctatatgtt
gatggtaaatgggaaattaccgataagcgtaaaaagcctaaaaaataa
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