Vibrio mediterranei: BSZ05_05900
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Entry
BSZ05_05900 CDS
T04936
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ05_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsh03019
]
BSZ05_05900
03400 DNA repair and recombination proteins [BR:
vsh03400
]
BSZ05_05900
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSZ05_05900
Messenger RNA biogenesis [BR:
vsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ05_05900
DNA repair and recombination proteins [BR:
vsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSZ05_05900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
AAA_22
zf-CXXC
Thioredoxin_8
Motif
Other DBs
NCBI-ProteinID:
ASI89373
LinkDB
All DBs
Position
1:complement(1286396..1288231)
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AA seq
611 aa
AA seq
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MTAVLLAEQSESQPSSQSVLESVFGYQEFRPGQQEVIDSAIEGNDGLVIMPTGGGKSLCY
QIPALVRSGITLVISPLISLMKDQVDQLKADGVAAECINSTQSKETLIDIYRRMNNGQLK
LIYVSPERVLMHDFIERLEHLELSMIAVDEAHCISQWGHDFRPEYAALGRLKEWFPFVPM
VALTATADDATRKDIIHRLNLNNPHEYLGSFDRPNIRYTLVEKHKPVSQIVRFLGENKGG
SGIIYCGSRKKVEMLTEKLCANHVRAAGYHAGMDMDERAYVQDAFQRDDIQVVVATVAFG
MGINKPNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADIGWLRRMLDEKEE
GPQKQVESHKLNAMNAFAEAQTCRRQVLLNYFGEYSEKPCGNCDICLDPPKHFDATQEAQ
KALSCVYRVNQSFGISYVVEVLRGMSNIRIREHGHDKLTTYGIGRDHSHDYWVSIFRQLI
HKGLLSQNITRNSTLQLTEEARPLLRGENSLELAVPRLDTAARSAKSDKLASKHYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGERKLEKYADPFL
DLIQEHLTQHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctgtgttacttgctgaacaatctgaatctcaaccaagttcacagtctgttttg
gaatcggtgttcggctatcaagaatttcgtcccggacagcaggaagttatcgatagcgcc
attgaaggcaatgatggcctagtcattatgcccacgggtggtggtaaatctctgtgttat
cagattccggccttagttcgtagtggtattacgctggtgatctctccacttatttcacta
atgaaagaccaggtggatcagttaaaggccgatggcgttgctgctgagtgcattaactca
acccaatctaaagaaaccctgattgatatctaccgccgtatgaacaacggtcaactgaag
ctgatttacgtatcgccagaacgagtgttaatgcacgacttcatcgaacgtctagagcat
cttgagttgtcgatgatagcggtcgatgaagcgcactgtatttctcaatggggacatgac
tttaggccagaatatgcagccttgggccgtttaaaggagtggtttccttttgttcctatg
gtggcgctgactgccaccgcagatgatgctactcgcaaagacattatccaccgtctgaat
ctcaataatccccatgaatatcttggcagttttgaccgtcctaatatccgctatacgcta
gtggagaaacataagccagtttctcagatagtgcgcttcttgggggagaataaaggaggc
agtggcatcatctattgcggcagccgtaagaaagtcgagatgttgaccgagaagctgtgc
gccaaccatgtgcgtgctgcaggctatcacgctggtatggatatggatgaaagagcctat
gtccaagacgcgtttcaacgtgatgatattcaagtagttgttgcgacagtcgcctttggg
atggggattaacaaacccaatgtgcgtttcgttgcgcattttgatattcctcgtaatatt
gagtcttactaccaagaaactgggcgagcggggcgtgatggattgccagcagaagcaatg
atgctctacgacccagccgacattggttggctgcgacgtatgttggatgaaaaagaagaa
gggccacaaaagcaggtagaaagtcataagctcaacgccatgaatgcgttcgccgaagca
cagacatgccgacgccaagtgctgttgaattatttcggtgagtatagtgagaagccatgc
ggcaactgcgatatatgtctcgaccctccgaaacattttgatgcgacgcaagaagcgcaa
aaagcgttgtcttgtgtctatcgtgtcaaccagagctttggtattagctatgtggttgaa
gtgttgcgtggtatgtcgaacattcgtattcgtgaacatggacacgacaagctgacgact
tatggcattggacgtgatcatagtcatgattactgggtgagcatatttaggcagctaata
cacaaaggtttgcttagccaaaatatcacccgaaactcgacattgcagctgaccgaagag
gctcgccctctgttacgtggagaaaacagcctagagttggcagtgcctcgattggatacg
gctgcacgaagtgccaaatctgacaagcttgcttctaagcattacgataagaagctgttt
gccaaactgcgtaagctacgtaagtcgattgccgacgaagatggtttacctccttatgtc
gtcttcagtgatgcaaccctgattgatatggcagaaatactgcccacctcttacggtgaa
atgctggcagtgaacggcgttggtgaacgtaaattagagaagtatgctgaccctttcctt
gatctaatacaggagcatttgacccaacatggctga
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