Vibrio mediterranei: BSZ05_05920
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Entry
BSZ05_05920 CDS
T04936
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03420
Nucleotide excision repair
vsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSZ05_05920
03430 Mismatch repair
BSZ05_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsh03400
]
BSZ05_05920
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSZ05_05920
DNA repair and recombination proteins [BR:
vsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSZ05_05920
MMR (mismatch excision repair)
Other MMR factors
BSZ05_05920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Speriolin_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
ASI89377
UniProt:
A0AAN1FFE7
LinkDB
All DBs
Position
1:complement(1291607..1293778)
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AA seq
723 aa
AA seq
DB search
MDPSLLLDGLNDKQREAVAAPLEHMLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMSV
TFTNKAAAEMRGRIEELMMGSSSGMWNGTFHGICHRILRAHYLDAKLPEDFQILDSDDQQ
RLLKRLIKAQNLDEKQWPARQAAWWINGKKDEGLRPQHIDSYQDPVTKTYLQIYTAYQEA
CDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMTGPD
CKVMIVGDDDQSIYGWRGAKVENIQKFLDEYLGATTIRLEQNYRSTKTILEAANELIANN
TERMGKELWTDGNEGEKISVYSAYNELDEARFAVNKIKEWQETGGSLTDCAMLYRNNAQS
RVLEEALIQAQLPYRIYGGMRFFERQEIKDALGYLRLIANRNDDAAFERIVNTPTRGLGD
KTLDTIRFAARDRGATLWEASNALLEEKVFAGRAAGALSRFIELINALEDDTFESALHEQ
TDHVIKTSGLFLMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEDMTLLTAFLTHAAL
EAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMEKLFITYAEMRRLYGQDKYHKPSRFIRELPETCLQEVRMKAQVSRPTSSGRFS
QTEVKNNFNETGFNLGARVKHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTQYAKL
EQL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatccatctcttcttctcgacggccttaatgacaaacaacgtgaagctgttgcagct
cctttagagcatatgttggtgctagctggtgctggtagtggcaaaactcgcgtacttgtt
catcgtatcgcttggttaatgtcggtggaaaatgcctctccgttttccattatgtcagtg
acgtttaccaataaagctgctgcggagatgagagggcgaatcgaagagttgatgatgggc
agttcgtcggggatgtggaatggtactttccatggtatttgccatcgtatactgcgcgct
cattatcttgatgcgaaactgccagaagattttcaaattctagactctgatgatcagcaa
cgcctactgaagcgattgataaaagctcagaatctagatgagaaacagtggccagcacgt
caggctgcatggtggatcaatggtaagaaagatgaaggtttgaggcctcaacacattgat
agctatcaagatcctgtaacgaagacctatttgcaaatctataccgcctatcaagaagcg
tgcgaccgagcagggctggtggactttgccgaaatcttgctgcgcgctcatgagctgctg
cgtgacaacaaatttgttcgcgagcactatcaagctcgctttaaacacattttggtggat
gagttccaagacaccaacaacattcagtatgcttggctacgaatgatgacgggccctgat
tgtaaggtgatgattgttggtgatgatgaccaatctatttatggctggcgcggcgctaaa
gtcgagaacatccagaaattcctcgatgaatatttgggcgcgacaaccattcgtctcgag
cagaattatcgctcaactaagaccattctagaagctgccaatgaactgatcgccaataac
acagagcgtatgggtaaagagctgtggacagacggtaatgaaggcgaaaaaatctcggtt
tactctgcttacaatgagctagatgaagcgcgctttgcggtcaataaaatcaaagagtgg
caggagacaggcggtagtctaacggactgcgcgatgctatatcgaaataacgcccagtct
cgtgttttagaagaagcgcttattcaagctcaactgccgtatcgaatctacggtggtatg
cggttcttcgagcgtcaagaaatcaaagatgcacttggttacctacgattgattgccaac
cgcaatgacgatgcggcgtttgaacgtatcgtaaataccccaactcgtggccttggagat
aaaacactggataccattcgtttcgctgcgcgagatcgcggtgcgacattatgggaagcg
agtaatgcactgctggaagagaaggtgtttgccgggcgcgcagcaggagcgttatcgcgt
ttcatcgaacttattaatgcattagaagacgatacctttgaatcagcactgcatgagcaa
accgatcatgttatcaaaacctcaggtttgttcttgatgtatgagcaggaaaaaggtgag
aaatccaaggcacgtattgaaaacttggaggaactggttaccgcaactcgtcaattcgaa
aagccggaagaggctgaagatatgacattgctgaccgcattcctaacccacgccgccctc
gaagctggtgaaggacaggcagatgagttcgatgatgcagtgcaattaatgacgctccac
agtgctaaagggttagagttcccaatggtatttatggttggggtagaggaaggcatgttc
ccaagtcagatgtcagcagaagaagcgggcaggttagaggaagagcgccgcttgtgttac
gtaggtatgacgcgtgcgatggaaaaactctttataacctatgcagaaatgcgtcgtctg
tacggtcaagacaaataccacaagccatcgcgatttattcgtgaactgccggaaacctgt
ctgcaagaagtacggatgaaagcacaggtcagcagaccaacaagctcggggcgatttagt
caaactgaggtgaagaacaacttcaatgaaaccggatttaatttgggagcgcgagtgaag
cacccgaaattcggcgaaggaacgattattaactttgaaggtagtgggccgcaaagtcga
gttcaagtagcctttaatggcgaagggattaagtggttggttactcaatacgcgaagctt
gaacagctttag
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