KEGG   Vibrio mediterranei: BSZ05_06980
Entry
BSZ05_06980       CDS       T04936                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
vsh  Vibrio mediterranei
Pathway
vsh03030  DNA replication
vsh03410  Base excision repair
vsh03420  Nucleotide excision repair
vsh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vsh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BSZ05_06980
   03410 Base excision repair
    BSZ05_06980
   03420 Nucleotide excision repair
    BSZ05_06980
   03440 Homologous recombination
    BSZ05_06980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vsh03032]
    BSZ05_06980
   03400 DNA repair and recombination proteins [BR:vsh03400]
    BSZ05_06980
Enzymes [BR:vsh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BSZ05_06980
DNA replication proteins [BR:vsh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BSZ05_06980
DNA repair and recombination proteins [BR:vsh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BSZ05_06980
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BSZ05_06980
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_5
Other DBs
NCBI-ProteinID: ASI89561
UniProt: A0AAN1FFA5
LinkDB
Position
1:1503258..1506056
AA seq 932 aa
MAHIPDNPLILIDGSSYLYRAFHAYPETMSNGEIPTNAVYGVVNMLRSMMRQFASERIAV
VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT
LAHQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGIKDLYERLDDIAPLGFRGSKTMAKKLTEHK
DNAVLSYELATIKLDVELDCTPESLLKQQPNVDELTKLYGQLTFKSWLNELLEGGTGEVE
AVESAARKTTSASQSDEQSEMDTSQVTIDRSAYETILTEESFNSWLEKLKSAPVIAFDTE
TDSLDYMVANLVGLSFAIEEGEAAYVPVAHDYIGAPEQLDRQWVLEQLKSLLEDDAIAKV
GQNLKYDASVLARYDIELKGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIA
GKGKAQLTFNQIDLEQASPYAAEDADVTFRLHQRLNAELEKNEALNRIYQDIEVPLVPVL
SRIERTGVLIDDMLLGAQSQEIAARLDELEQKAFEIAGQEFNLSSPKQLQTIFFEKMGLP
VIKKTPSGAPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHT
SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHL
SGDKALLDAFKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINFGLIYGMSAFGLSKQL
GIPRGEAQQYMDTYFERYPGVMQYMEDTRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRK
AAERAAINAPMQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVHDELVFEVESSSLSEI
ESKIQKLMESAAELDVPLVAEAGHGDNWDQAH
NT seq 2799 nt   +upstreamnt  +downstreamnt
atggctcatataccagacaacccactgattctcattgatggatcttcctatctttaccga
gctttccacgcctacccagaaacgatgagcaatggtgaaataccaaccaatgcggtttac
ggtgtagtgaacatgctgagaagcatgatgcgtcaatttgcttctgagcgaattgcggtg
gtgtttgatgcgaaaggtaaaactttccgtgatgatatgtatccggaatacaaggcaaac
cgtcctccaatgcctgatgatttgagatgtcagattgagcctctgcataatgtgattaaa
gcaatgggtctgccattgatctgtgtacctggcgtggaagcggatgacgttatcggtacg
ctggcgcatcaagcatcgcaagcaggtatgcctgtgcttattagcacgggtgataaagat
atggctcagcttgtggatgataatgttacgttgatcaataccatgaccaacgtagtgatg
gatcgagaaggtgtggtagagaagtttggtattcctccagagcttatcatcgattatctc
gctctaatgggcgataaagtggataacattccaggtgtccctggcgtcggcgataaaact
gcgacggcattgcttcaaggcattggtgggatcaaagatctttatgaacgcttagatgat
atcgcaccgcttggtttccgtggttctaaaaccatggctaagaaacttacagagcataaa
gataatgcagttttgtcttatgagttagcgacgattaagcttgatgtcgaattagactgc
acgccagagtctcttttaaagcaacaaccaaacgtggatgaactgactaaactgtacggt
cagcttacctttaagtcatggttaaatgagctacttgaaggtggcactggtgaagttgaa
gcggtggagagcgcagcaagaaaaaccaccagtgcatctcaaagtgatgaacaatctgag
atggacacgtcacaagtcaccattgatcgcagtgcctatgaaaccatcctgactgaagag
agcttcaacagctggttagagaaactgaagtctgctcctgttatcgcttttgatactgaa
accgacagcctagattatatggtggcgaaccttgttggtctgtcatttgcgattgaagaa
ggggaggcggcatatgtccctgtagctcacgactatattggtgcgcctgagcagcttgat
cgtcagtgggttttagagcagttgaagtcgctattagaagatgatgctattgctaaggtt
ggacagaacctaaaatacgatgccagcgtattagctcgttacgatattgagcttaaaggc
atcaaatttgacactatgctagcgtcttatgtctataacagtgttgggggcaagcatgat
atggatagccttgctctgcgtttcttgcaacatagctgtatctctttcgaacaaattgca
ggtaaaggtaaagcgcagctcacttttaaccagatcgatcttgagcaagcatcgccttat
gctgcagaagatgctgacgtgaccttccgactccatcagcgtttgaatgcagagcttgag
aaaaatgaagcgctgaatcgtatttaccaagatattgaagtaccactggtgccagttctg
tctcgtattgaacgtacgggggtactgattgatgatatgttgttaggcgcgcagtctcag
gaaattgcagcaagactggatgagctggagcaaaaggcgtttgagattgccggacaagag
ttcaacttaagctcgccaaaacagcttcaaaccattttctttgagaagatgggcttacct
gtaatcaaaaagacgccatccggtgcgccttctactaatgaagaagtgctacaagagcta
gcgctagactatccattaccaaagctgattttggaatatcgtgggttggctaaactgaag
tcgacttatactgacaagcttcctaagatgatcaatccagaaacaggccgtgtccatacg
tcataccaccaagccgtaacggcgactggccgtttgtcgtcgactgatccaaacttgcag
aatattccaattcgtaatgaagaaggacgccgtattcgacaagcgtttattgcgccgcat
ggatggaagattcttgcagtcgactattctcaaattgaactgcgaatcatggctcatctg
tctggtgacaaagcgttattggatgcgttcaaaaatggcaaagatattcacgcagcaacg
gcggcagagatcattggtgtcgatattgatcaggtgaccagtgaacaacgtcgccgtgca
aaagcgattaactttggtctaatctatggcatgagtgcatttggcttatctaagcagttg
ggtattcctcgtggtgaagcacaacaatatatggatacctattttgagcgttatccaggt
gtgatgcagtacatggaagacacgcgctcgttggctgctgaaaaaggttacgtggaaacc
atctttggtcgtcgcctacatctgccagaaatcaaatcgcgtaatggtatgcgtcgtaaa
gcagcggagcgagcggcgatcaatgcgcctatgcaaggtactgctgcagatatcatcaag
aaagcgatgttactcgttgatgagtgggtgcaagcagaaggtgagggtaaggttaagctt
cttatgcaagtacacgatgaactggtatttgaagtggaatcgtcatctttgagcgaaatt
gaaagtaaaatacaaaaattgatggaatcagcagcagagcttgatgttccattggttgcg
gaagctggtcacggtgacaactgggatcaggctcactag

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