Vibrio mediterranei: BSZ05_08065
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Entry
BSZ05_08065 CDS
T04936
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSZ05_08065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsh03021
]
BSZ05_08065
03400 DNA repair and recombination proteins [BR:
vsh03400
]
BSZ05_08065
Enzymes [BR:
vsh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSZ05_08065
Transcription machinery [BR:
vsh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSZ05_08065
DNA repair and recombination proteins [BR:
vsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSZ05_08065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ASI89732
LinkDB
All DBs
Position
1:1708285..1709277
Genome browser
AA seq
330 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG
DVEIANPEHVICHLTDDNAEISMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATYSP
VDKIAYAVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV
PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
LTEIKDVLASRGLSLGMRLENWPPASIAED
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagaatttcttaagccacgtcttgttgacatcgaacagatcagc
acgacacacgcaaaagtaactcttgagccattagagcgtggctttggtcacactctaggt
aatgcacttcgccgtattttactttcgtctatgccaggttgtgcagtgacagaagttgaa
atcgaaggcgttctgcacgagtacagcactaaagaaggcgttcaagaggatatccttgag
atacttctaaacttgaaaggcctagctgttcgcgttgcggaaggcaaagatgaagtgttt
attacactgaacaaatcaggctcaggccctgttgttgcaggtgacatcacccatgatggt
gatgtagagatcgctaacccagaacacgttatttgtcacctaacggatgacaacgctgag
atttctatgcgaatcaaagttgaacgtggtcgcggttacgttccagcttcagctcgtatc
catactgaagaagatgagcgtccaatcggtcgtttgcttgttgacgcgacttacagccca
gtagacaaaattgcctacgctgtagaagcggcacgtgttgagcaacgtactgacttagac
aagcttgttatcgatatggaaacgaacggtactctagaacctgaggaagctatccgtcgc
gcagctactatcctagctgagcaattggatgcattcgtagatcttcgcgatgtacgtgtt
cctgaggagaaggaagagaagccggagttcgatcctattctactgcgtcctgtagacgat
cttgaactaacagttcgctctgctaactgtctaaaagcagaagcgattcactacatcggt
gatcttgtacagcgtactgaggttgagctacttaaaacgccaaaccttggtaaaaaatct
cttacagagattaaagacgtacttgcatcacgtggtctttctctgggcatgcgcctagaa
aactggccaccagcgtctatcgctgaagattaa
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