Vibrio mediterranei: BSZ05_10430
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Entry
BSZ05_10430 CDS
T04936
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vsh
Vibrio mediterranei
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsh03016
]
BSZ05_10430
Enzymes [BR:
vsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BSZ05_10430
Transfer RNA biogenesis [BR:
vsh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BSZ05_10430
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Med27
Motif
Other DBs
NCBI-ProteinID:
ASI90170
UniProt:
A0AAN1FGJ6
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All DBs
Position
1:2226651..2227769
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AA seq
372 aa
AA seq
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MEYQIVTELAELESVCNKARESDVVMLDTEFVRIRTFYPKLGLIQLYDGEQLSLIDPLTI
SDFTPFIELLQDVSVLKVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFLGHGLSTGFAA
LVDEYLGVELDKSESRADWVARPLTDKQLDYAAADVYYLWPLYFKLFAQVEAKDWWDAAQ
QESDLLMQKRGKTPNPDSAYLDIKGAWQLKRKQLAILKPLATWRMNEALKRDLALNFVIK
EQELWSIARFALKKPKQMEEEGVDPRAIRRHGERIAAIVKRAQQTPEEEYPDKIERLMDF
PGYKQVFKKLKDEVKKAAQHSGLATEFLASKKQLNQYLSWIWKYDRDPARLPDVMQGWRL
ELFGQNLDKVMD
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
gtggaatatcaaatagtaaccgagttggccgaactagagtcggtatgtaacaaggctcgt
gaatccgatgtagtcatgttggataccgagtttgtacgtatccgtaccttctaccctaaa
ctgggtctcatccagctatacgatggtgagcagctgtcacttatcgatccgttgactatt
agtgatttcaccccttttattgaactgcttcaagatgtctcggtactcaaagtcctccat
gcctgcggagaagatttggaagtgttcgtcaacagtttcggatgcatgccattcccaatg
gtcgatacgcaaatcatggcagccttcttaggtcacggactatcgacggggtttgctgca
ttggttgacgaataccttggtgtagagctcgataagagtgaatcccgagctgattgggtt
gcgcgtccactgacagataagcaactggattatgcagcggctgatgtttattacctatgg
cctctgtatttcaaactgtttgctcaagtggaagcaaaggattggtgggatgccgcacag
caagaatctgacttgttaatgcaaaaacgtggtaaaacgccaaatccagacagtgcttac
ctcgacattaaaggtgcttggcaattgaagcgcaagcaattggccatcctcaaaccttta
gccacgtggcgaatgaatgaagcactcaagcgtgaccttgcactaaacttcgtcatcaaa
gagcaagagctgtggagtattgcgcgttttgcgcttaagaagcctaagcagatggaagaa
gagggcgtggatccacgtgcaattcgtcgtcatggtgagcgcattgctgctattgtcaaa
cgcgcccaacaaacaccagaagaagagtacccagataaaatcgagcgcctaatggatttt
ccgggttacaaacaggtctttaagaagctcaaagatgaagtgaaaaaagcggcgcagcac
agtggcttggcaactgagtttttagcatctaaaaagcaacttaatcaatacctttcatgg
atatggaagtacgaccgagacccggcgagattgccagatgtgatgcaagggtggcgactg
gagttgttcggtcaaaacttagataaagttatggattaa
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