Vibrio mediterranei: BSZ05_23275
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Entry
BSZ05_23275 CDS
T04936
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ05_23275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsh03019
]
BSZ05_23275
03009 Ribosome biogenesis [BR:
vsh03009
]
BSZ05_23275
Enzymes [BR:
vsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ05_23275
Messenger RNA biogenesis [BR:
vsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ05_23275
Ribosome biogenesis [BR:
vsh03009
]
Prokaryotic type
rRNA helicases
BSZ05_23275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASI92698
UniProt:
A0A241TBJ2
LinkDB
All DBs
Position
2:complement(1452070..1453974)
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AA seq
634 aa
AA seq
DB search
MQDSSIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAF
SLPLLNKLNLDQRKPQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPET
AQRVLFSATMPPMLKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLDKFAELVEKLQESLEIDAAT
LAAILLKRQQGKRPLFYIGEDPMIAAIERDKQRRKERREGGRDGGRDGRRSFNTADWDTY
QLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDRESTYVQLPKQMTSDVAGKLRKLR
IRQKEAGAVVVDFTDFREPRGRRDGGRRDGNRDGNRGGYRGNREGGGYRGNRDGNREGGR
GRDGERRFDRNRGGDHRGSHRGERSFSRNRRDEA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattcttcaattcagtttagcgatttagcgctgaacgactcaatcctttctgct
cttgacggaatgggtttcgtatctccaactcctatccaagctgcggcaattccgcacttg
ctagcgggcaaagatgcgctaggtaaagctcaaactggtactggtaaaacagctgcattc
tctcttccactgcttaacaagctaaatcttgaccaacgtaaaccacaagctgtggttctt
gcgccgactcgtgaacttgctattcaagttgcggcggaaatgaaaaaccttggtcaaaat
atcaatggtctaaaagttttagagatctacggtggtgcatctatcgttgatcaaatgcgt
gcacttaaaaatggtgctcacattgttgttggtactcctggtcgtgttcaagacctaatc
aaccgtgaccgtttacacctagacgaagtacacacgttcgttcttgatgaagcagacgaa
atgcttaacatgggctttgttgatgacgtaacagagatcatggagcacgctccagaaaca
gcacagcgcgtattattctctgcgactatgcctccaatgcttaagaagatcgttgatcgt
ttcttgcgtgagccagagtacgttgacgttgctggtaaaaaccacacggtagacaaagta
gagcagcagttctgggttgttaaaggtgtagagaaagacgaagcaatggcacgtcttctt
gaaactgaagaaacagatgcgtcaatcgtattcgtacgtactcgacaagatactgagcgt
ctagctgactggctatctgcacgtggctttaaagcggcagcactacacggtgatattcct
caatctttgcgtgagcgcactgttgaccacatcaaacaaggtgttatcgacatcctagta
gcgactgacgttgttgcacgtggccttgatgtaccgcgtattacacacgtatttaactac
gacatcccgttcgatgttgagtcatacatccaccgtatcggtcgtactggtcgtgctgga
cgtaaaggtaaggcgattcttctagttcgcactaaccaaatccgtatgcttcgtactatc
gagcgagtgactaagtcatcaatggaagaaatccaacttcctctacgtgacaaagttgca
gaagctcgtctagttaaactaggtgcagagcttgagcaagagaaagagcataagtctcta
gacaaattcgctgagcttgtagagaaactacaagaaagcctagaaatcgatgcagcaaca
ttggcagcgattctacttaagcgtcaacaaggcaaacgccctctattctacattggtgaa
gatccaatgatcgcggctatcgagcgtgataagcaacgtcgtaaagagcgccgtgagggt
ggtcgtgacggaggccgtgatggtcgtcgtagcttcaacactgccgattgggatacatac
caactgcaagtaggtcgtgagcaaggcgttcaagttaaagacatcgtaggtgcacttgcg
aatgagcttggcctaactaaaggttctattggtgcaattaagctagatcgtgagtcaact
tacgttcagcttccaaagcaaatgacctctgatgttgctggtaaacttcgtaaactacgt
attcgtcaaaaagaagcgggtgcggtagtggtagacttcactgatttccgtgagcctcgt
ggtcgtcgtgatggtggtcgtcgtgacggtaaccgtgatggcaaccgtggtggttaccgt
ggcaaccgtgagggtggtggttatcgtggcaaccgcgatggcaaccgtgaaggtggtcgt
ggtcgtgatggcgagcgtcgttttgatcgtaaccgtggtggtgaccatcgtggtagtcac
cgtggtgagcgcagtttctcacgcaatcgtcgtgatgaagcataa
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