Vibrio sinaloensis: MTO69_02280
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Entry
MTO69_02280 CDS
T08230
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vsi
Vibrio sinaloensis
Brite
KEGG Orthology (KO) [BR:
vsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vsi03009
]
MTO69_02280 (rlmD)
Enzymes [BR:
vsi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MTO69_02280 (rlmD)
Ribosome biogenesis [BR:
vsi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MTO69_02280 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
MTS
RrnaAD
Methyltransf_23
Cons_hypoth95
Methyltransf_15
Methyltr_RsmB-F
PrmA
DOT1
Ubie_methyltran
FtsJ
Motif
Other DBs
NCBI-ProteinID:
UPQ88394
LinkDB
All DBs
Position
1:474815..476134
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AA seq
439 aa
AA seq
DB search
MARFFQAKKKTQLNTKHQLFTIEKLDHHGAGIAYQNRKPVFIEGGLPGEQVLAQLTESKS
KYARANLIKVQKASEQRVEPICAYYQECGGCNMQHLDIESQRAYKQQTLSQLMAKFAGQS
IDPEAPVVGPQQGYRRRTRISIKLNKRTQQMEFGFRKKHSQEIVTVDACPILDLELSQLI
APLHKLLQSFANQQRLGHVELVKGDNTKVIVLRHLKSLTESEQQLLQQFAEQHQATLYLM
PQAEQLHRVVGERPYYQESGVTIPFEPNNFIQVNQSVNHGMVSQALAWLELKPQDRVLDL
FCGLGNFSLPLAQSVSQVVGVEGVDEMVNKASANARLNHVENARFYQANLEQDVSGLPWT
AEKFDKILLDPARAGASGIIDQVASLGAHRVVYVSCNPATLARDSQSLLKQGFKLQKLGM
LDMFPHTSHLESMALFVKD
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgttttttccaagctaagaagaaaactcaactcaacactaagcaccagttattc
actattgaaaagctcgatcaccacggtgccggcatcgcttatcaaaacagaaaaccggtg
tttattgagggcggattgccgggggagcaggtactggctcaactgaccgagagtaagagt
aagtatgcacgcgctaacctgatcaaggtgcaaaaagccagtgagcaacgtgttgagccc
atttgtgcttactatcaagagtgtggcggctgcaatatgcagcatctcgatatcgagtca
caacgcgcctacaagcagcagacgcttagccaactgatggccaagtttgctgggcagagt
attgaccctgaagcgccagtggttggcccgcaacaaggctatcgccgccgtacccgcatc
agcatcaagctcaacaagcgcacgcaacagatggagtttggttttcgtaaaaaacacagc
caagaaatagtgacggttgacgcctgtccgatcttggatttggagctcagtcagttaatt
gcgccattacataagctgttgcaaagctttgccaatcagcagcggttaggacatgtagag
ctggtcaaaggtgacaacactaaggtcatcgtgttgcgtcatctaaaatcgctcactgag
tcggaacagcaattgctgcaacagtttgctgagcagcatcaagcgacactatacctgatg
ccccaggctgagcagttgcatcgagtggtgggtgaacgcccctattatcaggagtcgggg
gtgacgattccgtttgaaccaaataactttattcaggtcaaccaaagcgtcaaccatggc
atggtaagccaagctctcgcatggttagagcttaagccgcaagatcgtgtgcttgacctt
ttctgcggccttggaaatttcagcttaccgctagcacaaagtgtgtcacaggtagtggga
gttgaaggtgtggatgagatggttaacaaggcaagcgccaacgcccgactcaatcatgtc
gaaaatgcgcgtttttaccaggcaaatttagaacaagatgtctctggtctgccctggaca
gcagaaaaatttgataaaatactgctcgatcctgccagggctggtgccagtggtatcatt
gatcaagttgcgtcgctaggcgcgcatcgagtggtctatgtctcatgtaacccagcgacg
ttagctcgagattcacaaagcttactaaaacaaggcttcaaattacaaaaattaggtatg
ctcgatatgttcccgcatacaagccatttagaatcaatggcgctctttgtaaaggattaa
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