Vibrio sinaloensis: MTO69_05065
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Entry
MTO69_05065 CDS
T08230
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vsi
Vibrio sinaloensis
Pathway
vsi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MTO69_05065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsi03400
]
MTO69_05065 (mfd)
Enzymes [BR:
vsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MTO69_05065 (mfd)
DNA repair and recombination proteins [BR:
vsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MTO69_05065 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Glyco_tran_WecG
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
T1R_D3-like
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UPQ88901
LinkDB
All DBs
Position
1:complement(1064727..1068188)
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AA seq
1153 aa
AA seq
DB search
MPNTSLLNLTAASGAGDKKQFGNLRGAGLALAIAELANKHSAHTLLAVPDPQTALKLQQE
IEQFTQQEVALFPDWETLPYDNFSPHQEIISDRIARLYQLPTLTDGITIVPISTLLQRQS
PREFLLQHTLMVKVGDLFSLEKLRIQLEKSGYRHVDQVFGPGEYASRGSILDLYPMGASS
PYRIDFFDDEIDTIRTFDPENQRSIEDTQEIRLLPAHEFPTSESAIEDFRIRWRQRFEAR
REPESVYMQVSKGTWPSGIEYWQPLFFERTETLFDYIPEQTQLITVGEIESAIDTFLADV
EYRYDQRKVDPLRPLLPPEELWLKKDELFSHFKQLPQNALFTESIGEKQGRSNAALNALP
ELAVQHQNKEPMAALRQFSESFAGKIVFSVESEGRREALLELLQRIKLRPESAATFADAL
ASQQKFSLVLGAAEHGFIFADNQVALICESDLLGDRVIQRRRKDRKSTNSDAVIRNLAEL
KPGQPVVHIDHGIGRYVGLQTLEAGGMTTEYVTLEYQNDAKLYVPVASLNLISRYSGGAE
DGAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFALDRDQYATFKAGF
PFEETDDQSMAINAVMSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKTAKEQKQILQDIEDGKVDLVVGTHKLLSND
IKFHDLGLLIVDEEHRFGVRQKEKMKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQRDDAVVREAVLREIMRGGQVYFLHNQVETIEKVAADLEKLIPEAR
ITVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPSLDELLREQTEVEMRLPALLPDDYI
PDINTRLSMYKQIASVSSSEELSELKIELIDRFGLLPDAAKNLLSVAELKLTAARLKVKK
VEAHDKGGYIEFYPDADINPMYLVKLLQSQPQKFAMDGPTKFKFTIPLVDRRKRIQFVND
MLAEFQQNLLPKA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcccaatacttcactactcaatctcactgccgccagcggcgctggagacaaaaaacaa
tttggcaaccttcgtggggcggggctggctttggccattgctgagcttgccaacaaacac
agtgcacatactctgttagcggtgcccgacccgcaaactgcactcaagttgcaacaagaa
atcgaacaattcacccagcaagaagtggcgctgtttcctgattgggaaacattaccctac
gacaacttctcgccgcatcaagagattatctctgaccgcatcgcccgtttgtaccaatta
cccacgctaacggacggcatcaccattgttcccattagtactttgctgcaacgtcaatcg
ccgcgtgagtttttgctccaacacaccttaatggtcaaagtgggcgatttgttctcgcta
gaaaagctgcgcatccagcttgaaaaatctggctatcgtcatgtcgatcaagtgtttggc
cctggtgaatacgccagccgtggctccattctcgatctctacccaatgggggcaagcagc
ccatatcgtatcgacttttttgatgacgaaattgatacgattcgtaccttcgatcccgag
aatcaacgttcaatcgaggatacccaagagatacgcttactgcctgctcatgagtttccc
accagtgaatcggccatcgaagactttcgcattcgttggcgtcagcgctttgaggcgcgt
cgcgagcctgagtctgtctacatgcaagtctctaaagggacttggccatcaggtattgag
tattggcagccgctgttttttgagcgtacagaaaccctgtttgactacatcccagagcag
actcagttaatcacggttggagaaatcgaatcagcgattgatacttttctcgctgatgtc
gagtatcgttacgatcagcgtaaagtggatccactgcgtcctctgctgccccctgaagag
ctgtggctaaaaaaggatgagctgtttagccacttcaagcaattgccgcagaatgcgctg
tttaccgagtcaattggtgaaaagcaaggccgcagcaacgccgcgcttaacgctcttcct
gagcttgcggttcagcaccaaaacaaagaaccgatggcggctttacgtcagtttagtgaa
agttttgccggcaaaatcgttttttcggtcgagtctgaaggtcgccgcgaagcgctgtta
gaactgttacagcgaatcaagctaagacccgaatcagccgctacgtttgctgatgcgctc
gcaagccagcaaaagttcagtttggtattgggcgcggcggaacacggctttatcttcgcc
gacaaccaggttgcactgatttgtgaaagtgacttgcttggcgatcgcgttattcagcgc
cgccgcaaagaccgtaagagcaccaacagtgacgcagttatccgtaaccttgccgagcta
aaaccaggtcaacccgtggttcatatcgaccacggtatcggtcgatacgtcggtttacaa
acccttgaagcgggcggaatgaccacagagtatgtgacgctcgaatatcaaaacgacgcc
aaactttacgtaccagtggcatcgttaaatctaatcagtcgctactcaggcggcgcagag
gatggcgcaccgctgcacaaattaggcggagaagcctgggcaaaagcacgacgtaaagcc
gcggaaaaagtgcgcgatgtcgccgccgaactgctcgatgtttacgcgaaacgtgagctc
aagcctggatacaagtttgcactcgatcgcgatcaatacgccacatttaaggctggtttc
ccgtttgaagagaccgatgaccagtcaatggccatcaacgctgtgatgtctgacatgtgc
caagctaaggcgatggatagactggtttgtggtgatgttggctttggcaaaactgaggtc
gcgatgcgtgcagccttcgtggccaccgacaatggaaaacaagtcgccgtattggtaccg
actaccttgctcgctcagcagcattttgaaaacttccgtgatcgcttcgccaatctacct
atccgtgtcgaggtactatcacgctttaaaacggctaaagagcaaaaacagatactgcaa
gacatcgaagacggcaaagtcgacttggtggttgggacacataaactgctatccaacgac
atcaaattccacgaccttgggctgttgatcgtcgatgaggaacatcgatttggcgtacgt
caaaaagaaaaaatgaaagcgatgcgcgctgatgtggatattctgactctcaccgccacc
cctatcccgcgaacgctaaacatggccatgagtggtatgcgcgatttgtcgatcatcgcg
acgccaccagcacgtcgtttggcgatcaaaacctttgttcgtcaacgtgatgatgccgtg
gttcgcgaggctgtgcttcgagaaatcatgcgcggcggtcaggtgtacttcttacataac
caagtagaaaccatagaaaaagtcgccgctgaccttgaaaaactgatcccagaggcaagg
attaccgtcgctcacggtcaaatgcgcgagcgtgagttggagcggatcatgaacgatttc
tatcatcaacgtttcaacttgctcgtctgtaccaccatcatcgaaaccggtattgatgtc
cctaccgccaacaccattattatggaccgagcagataacttaggtttggcgcaattgcat
cagttgcgcggccgcgtgggtcgctcgcaccaccaagcgtatgcctatttgctgacccca
caccctaaagcgatgaccaaagacgcgattaagcgccttgatgcgattgcctcgcttgaa
gacttgggtgcaggctttaccctagcaacgcacgatctcgagattcgcggagccggtgaa
ctgctgggagatgaacagagcggacagattcaatcggtaggctttacgctttacatggaa
atgctcgagcaagccgttgaagcgctcaaagaaggcaaagagccttctttggatgagctg
ctacgcgagcaaaccgaagtcgagatgcgcctccccgcgctactcccagatgactacatt
cctgacattaacacccgattgtcgatgtacaaacaaatcgccagcgtaagcagtagcgaa
gagttgagcgaactcaaaatcgagttgattgaccgtttcggattgctgccagatgcagcg
aaaaacctactgtctgtcgctgaattgaagctgactgcggcaaggttgaaagtgaagaag
gtggaagcgcacgacaaaggcggctacatcgaattctatccagatgctgacattaacccg
atgtatttggttaaactattgcagtctcagccacaaaaattcgctatggatggccccact
aagttcaagtttacgataccattagtcgatagacgcaaaagaattcagtttgtgaatgac
atgttggccgagttccagcaaaatctattgcctaaggcttaa
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