Vibrio sinaloensis: MTO69_11090
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Entry
MTO69_11090 CDS
T08230
Symbol
vpsR
Name
(GenBank) cyclic-di-GMP-binding transcriptional regulator VpsR
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vsi
Vibrio sinaloensis
Pathway
vsi05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
MTO69_11090 (vpsR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vsi03000
]
MTO69_11090 (vpsR)
Transcription factors [BR:
vsi03000
]
Prokaryotic type
Helix-turn-helix
Other families
MTO69_11090 (vpsR)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_22
AAA_16
HTH_29
AAA
AAA_5
AAA_2
HTH_50
HTH_22
HTH_IclR
HTH_7
HTH_17
nSTAND3
DUF815
NB-ARC
DUF7130
HTH_Tnp_1_2
AAA_13
AAA_7
Motif
Other DBs
NCBI-ProteinID:
UPQ87556
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All DBs
Position
1:complement(2452344..2453678)
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AA seq
444 aa
AA seq
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MGSQFRMDSVPGSLVVVGGTYEPWLSVLEQVGWRCTQCGDLRKADALFTETGPCIGIVDL
SHDEFSLNGIANLVSKHKQVRWLAFIRESQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPHYGNQSDMGLIGDSIPVKRLRDQIKRIGPTDVSILIYGESGTGK
ETVARAVHRTSARANNEFISVNCRAMSERRIESDLFGINREDHSEPSILEKADGGTILLN
DILTLPRSQQYNLLRFLQEGMVDTVNGRKEVDVRVLAANSADIEKALIDGDFNEELYHYI
NVLRISVPSLKERAGDVAILARHFLQEYSKEYNAQARSFTEEASRALTRYHWPGNVRELM
NQIKRVVLMSDTVMLDECHLDLPKRSDNRRSLKSIRERSERDALLLVLESHSGQVSMAAK
ELGVSRATMYRLLNKHNLISDIPV
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgggtagtcaattccgaatggattccgttcccggttctttggttgtcgtagggggaacc
tacgaaccatggttgtctgtacttgaacaagtcggttggcgatgtactcaatgtggcgat
ttacgtaaagcagatgccctttttactgaaaccgggccctgtatcggtattgtcgattta
agccacgatgaattcagcctcaacggtattgctaacctagtgagcaagcacaaacaagtg
cgttggctcgcttttatccgagaatcgcagctgagctcggataccatttgtcagtttatc
gtgaacttctgtatcgacttttttaccgcacctatcccagatgctcagctacttagcact
attggtcatcagctaggtatgctcaagcttgagaagaaagtgtggccacattacggcaac
cagagtgatatggggctgattggagactccataccagtcaaacggctacgtgaccaaatc
aagcgtattggtccaaccgatgtcagtattctgatttacggcgaaagtggtactggcaaa
gagacggtggcgcgcgccgtccatcgcacttctgctcgagcgaataacgagtttatttcg
gttaactgccgcgccatgtctgagcggcggattgaaagcgatctgtttggcattaaccgt
gaagatcacagtgaaccatccatccttgagaaagccgatggtggcaccattttacttaat
gatattttgaccttaccgaggtcgcagcagtacaacttgctgcgtttcctgcaagaggga
atggtagataccgtaaatggacgcaaagaggtggatgttcgagtgttggcggcgaactct
gcggatattgaaaaagcgctcatcgacggcgatttcaatgaggagctataccactacatc
aatgtgctgcgtattagtgtcccaagcttgaaagaacgtgctggtgatgtggccattctg
gcccgacactttttgcaagagtactctaaggagtacaacgcacaggcgcgcagctttact
gaagaagctagccgagcgctgacacgctatcactggccaggtaacgttcgtgagctgatg
aaccagattaagcgcgtggtattaatgtcagataccgtcatgctcgatgagtgtcattta
gatttacctaaacgcagcgacaatcgacgcagtttaaaaagcattcgtgagcgcagtgag
cgggatgcgctgcttctggtactcgagtcgcactctgggcaagtttcgatggctgccaaa
gaactgggtgtatcgcgtgcaactatgtatcgtttgttaaacaagcacaacctgatttca
gacatccctgtgtaa
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