Vibrio sinaloensis: MTO69_11605
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Entry
MTO69_11605 CDS
T08230
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vsi
Vibrio sinaloensis
Pathway
vsi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vsi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MTO69_11605 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsi03021
]
MTO69_11605 (rpoD)
Transcription machinery [BR:
vsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MTO69_11605 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
UPQ87649
LinkDB
All DBs
Position
1:2574728..2576584
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AA seq
618 aa
AA seq
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MDQNPQSQLKQLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIRVVETAP
DADDLALNDDDTITDEDAAEAAAAALSSVENEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQNAVAEYPGTIPYILEQFDKVQAEELRLTDLITGFVDPDADETTAPTA
THIGSELAESDLEDEDEEDEDDEESDDDESEEEDTGIDPELALEKFTSLRNTFQNYQLAC
NEYGRESPKAQIANELVIDVFKEFRLTPKQFDYLVDELRTSMERVRTQERLIMKAAVEYG
KMPKKSFITLFTGNESSEAWLDEILASDKPYAEKIRRSEDDIRRSIAKLKAIEEETSLTV
QSIKEISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG
REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA
TATSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSETLRSFLDE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaagcaacttgtcattaaaggcaaagaacaaggc
tatctgacctacgcagaagtaaacgaccacctgccggcagaaattgtcgattcagaacag
gtcgaagatatcattcagatgatcaatgacatgggcatccgagtcgtggaaaccgctcct
gacgccgatgatcttgctctcaatgatgatgacaccatcaccgatgaagacgcagctgaa
gccgctgccgctgcgctatcaagcgtagaaaacgaaatcggccgcaccactgacccagtg
cgcatgtacatgcgtgaaatgggtacagttgaactattgactcgtgaaggcgagatcgat
atcgcgaagcgtattgaagatggtattaaccaagttcaaaatgctgtagcggagtatccg
ggcaccatcccatacattctcgagcagtttgataaggttcaagccgaagagcttcgtctt
accgatttgatcaccggcttcgttgacccggatgcagacgagacgacagcgccaactgca
actcacatcggttctgagctggctgagtcggatcttgaagatgaagacgaagaagatgaa
gacgatgaagagtcggatgacgacgaatcagaagaggaagatacaggcatcgaccctgag
cttgctctagagaagtttacctctctgcgcaacactttccaaaactatcagctagcgtgc
aacgaatacggacgcgaaagcccgaaggcgcaaatcgcgaatgagcttgtcatcgatgta
ttcaaagagttccgcctaacaccgaagcaattcgactacttggttgatgagctgcgtacc
tctatggaacgtgtccgtactcaagagcgtctgatcatgaaagcggccgttgagtacggc
aaaatgccgaagaaatctttcattactctgtttacaggcaatgaatctagcgaagcatgg
ttagatgagattcttgcatcagataagccttacgccgagaagattcgacgtagtgaagac
gatattcgccgctcaatcgcaaaactaaaagcgatcgaagaagagacgtcactcacggtg
cagagcatcaaagaaatcagccgtcgtatgtctatcggtgaagccaaagctcgccgtgcg
aagaaagagatggttgaggcgaacttacgtctggttatttcgattgccaagaaatacacc
aaccgtggtcttcaattcttggatcttatccaagaaggtaatatcggtctgatgaaagcg
gtagataagtttgaataccgccgcggttacaagttctcgacttatgcgacttggtggatt
cgtcaggcgattacacgctcgattgcagaccaagcacgtaccattcgtattccggtacac
atgatcgaaacgatcaacaagctcaaccgtatctcgcgtcaaatgctgcaagagatgggg
cgtgagccactaccggaagagctggcagagcgcatgcaaatgccagaagataagattcgt
aaagtactgaagatcgctaaagagccaatctcaatggaaacacccatcggtgatgacgaa
gattcgcatctaggtgactttatcgaggacaccacactagagctgccactagactcagca
acagcaacaagtctaaaagtggccactaaagatgttctggctggcctaacacctcgtgaa
gcaaaagtactgcgcatgcgttttggtatcgacatgaacactgaccacactctagaagaa
gtgggtaagcagttcgacgtgactcgtgaacgtattcgtcagattgaagcgaaagctctg
cgtaaacttcgtcaccctagccgctcagaaactctgcgcagcttcctagacgaataa
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