Vibrio sinaloensis: MTO69_12350
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Entry
MTO69_12350 CDS
T08230
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vsi
Vibrio sinaloensis
Pathway
vsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTO69_12350 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsi03019
]
MTO69_12350 (rnr)
03016 Transfer RNA biogenesis [BR:
vsi03016
]
MTO69_12350 (rnr)
Enzymes [BR:
vsi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MTO69_12350 (rnr)
Messenger RNA biogenesis [BR:
vsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MTO69_12350 (rnr)
Transfer RNA biogenesis [BR:
vsi03016
]
Prokaryotic type
tRNA degradation factors
MTO69_12350 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
UPQ87774
LinkDB
All DBs
Position
1:complement(2703309..2705762)
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AA seq
817 aa
AA seq
DB search
MSDNIHNDPFAARESENYDNPIPSREFILEFLSQAGVPMNRNDLFEALKLEGEDQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMIKGYVIGHKDGHGWVRPDGSVGKDNDIVLPHH
QMKNIIHGDYVLVQPTDNSKRGRKEGRLVRVLEERQSQIVGRFFMEYGYSYVVPDDSRIH
QDILIPNELRAGARMGNVVVIEITDRGSRSRGMMGKVIEVLGENMAPGMETQIAIRTHQI
PHDWPVEVEKQIESLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYNKVHDILEGDEELRSRYEPLVPHLEELHKM
YKVLKQARDHRGAIEFETVETKFIFNAERKIDSIEPVIRNDAHKLIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLGELGLHLNGGLEPSPTDYADLVRQIGERADKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKENGTV
RDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVIA
NVTGFGFFVRLSELHIDGLVHISALANDYYQFDPIGQRLIGESFGAIYRLGDSVKVKVLS
VNLDDRQIDFELVETSRKLRGEGKTAKKRAAEAKRKAKEKKRAATKGGRKASPDVEPTKR
PDRDEGKAGKKPKVTKARKKKPGAKPKKTKRTKKDAQ
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatatccataatgacccatttgcagctcgtgaatcggaaaattatgacaat
ccgatcccgagccgagaatttattctagagtttctcagtcaggcaggcgttcccatgaac
cgcaatgacctgttcgaagcgctcaagcttgagggagaagatcagtacgaaggtttacgt
cgtcgtctgagagcgatggagcgagacggccaactggtgtttactcgtcgtcaatgttac
gcattgccagaaaagctcgagatgatcaaaggctacgtgattggccataaagacggtcat
ggttgggtacgcccggatggaagtgtcggcaaggataacgatatcgtcctgccacatcat
cagatgaaaaacatcatccatggtgattatgtcttggtgcaaccgacagacaattcaaaa
cgcggccgtaaggaagggcgtctggttcgcgttctcgaggagcgtcaaagccaaatcgtt
ggtcgtttctttatggaatacggctactcctatgttgtaccggatgactcgcgcattcat
caagatatcttgatcccgaacgagcttcgtgccggcgctcgtatgggtaacgtggtggtg
attgagatcaccgaccgtggttcacgctctcgcggcatgatgggtaaagtgattgaagtc
cttggtgagaatatggcgccgggcatggagacacaaattgcgattcgcactcatcagatc
ccacatgattggcctgttgaggttgagaagcagatagaaagcctgggcgaagaagtgcca
gaagaagccaaagtgggtcgagttgacctgcgcgagctgccattagtcactattgatggt
gaagacgctcgagacttcgatgatgcggtttactgtgaagcgaaaaaaggcggcggctgg
cgcttatgggtggcgattgcagatgtaagctattatgttcgaccagacaccgcgttagat
aaagaagctattaaccgtggtaactcggtttacttcccatcgcaagttgtacctatgtta
ccagaggtgctttccaacggactatgttcactcaatccacaagttgaccgcctatgtatg
gtgtgtgaaatgaccatctcggaaacgggtaagctctcaggctataaacactatgaagcg
gtgatgaactctcatgcgcgtctgacttataacaaagtccacgatattctcgaaggcgat
gaggagttgcgtagccgctacgagccgcttgttcctcatctcgaagagttgcacaaaatg
tacaaggtgctgaaacaagcgcgtgatcatcgtggcgcgattgaatttgaaacggtcgag
actaagtttattttcaacgcggaacgcaagatcgacagcattgaacctgtgattcgcaac
gacgctcataagttgattgaagagtgcatgattctagcgaatattgcgtcagcgtctttg
gtcgaaaaagccaaagagccggctctgtatcgtattcatgaatctccaggcgaactgcgc
ttgcaaggctttcgagattttctcggagagcttggtctgcacctgaatggtggtttggag
ccatcacctaccgattatgccgacttagtacgacaaattggcgagcgtgctgacaaagag
ctgattcaaaccatgttgttgcgctcaatgaagcaagcggtatacaacgcagacaactgc
ggtcactttggattggcgcttaaacgctacgcgcactttacttctccgattcgacgttat
cccgatttgctgcttcatcgcgcgatcaagtacctcatcgccaaagaaaacggcaccgtt
agagaccgctggacgccgacagggggctatcactactcgttcgatgatatggacttctat
ggcgagcagtgttccatgactgagcgccgcgccgatgatgcgacgcgagaagtatctgat
tggctcaaatgtgaatacatgcaagaccatgttggtgaagagctggaaggcgtcattgcc
aacgtgactggatttggcttctttgttcggttgagcgagctgcacattgatggcttagtg
catatatccgcactcgccaatgactactatcaatttgatccgattggtcaaagacttatc
ggcgaaagttttggtgcgatttaccgcttgggtgactcggtcaaggtgaaggtcctttcg
gttaacttggatgatcgtcaaattgactttgaattagtcgaaacaagtcgtaagctacgc
ggcgaaggaaagacggccaagaagcgagcagcagaggctaagcgcaaagcgaaagagaaa
aaacgcgcagccactaaaggcgggcgtaaagccagtcctgatgttgagccaactaagcga
ccggatcgtgatgaaggtaaagcaggcaagaagccaaaagtcaccaaggcgcgtaagaag
aagccgggtgctaagccgaagaaaaccaagcgcaccaagaaagatgcgcagtaa
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