Vibrio sinaloensis: MTO69_17765
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Entry
MTO69_17765 CDS
T08230
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vsi
Vibrio sinaloensis
Pathway
vsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTO69_17765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsi03019
]
MTO69_17765
03009 Ribosome biogenesis [BR:
vsi03009
]
MTO69_17765
Enzymes [BR:
vsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MTO69_17765
Messenger RNA biogenesis [BR:
vsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MTO69_17765
Ribosome biogenesis [BR:
vsi03009
]
Prokaryotic type
rRNA helicases
MTO69_17765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UPQ89597
LinkDB
All DBs
Position
2:complement(949774..951663)
Genome browser
AA seq
629 aa
AA seq
DB search
MTDSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAF
SLPLLNKLDLGQRKPQAIVLAPTRELAIQVAAEIKNLGKNIAGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPES
AQRVLFSATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI
ERVTKSSMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFAELVDKLQESLELDAAA
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRREGGRSFNNQDWDTY
QLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSSETAGKLRKLR
IRQKQVDAVVCDFDDFREPRGRRDGGGRRDGGYRGNREGGRREGGFRGNREGGRGGRDGE
RRFDRNRGGDHRGNYRGERGHGRDRRSEA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaattcagtttagcgatctagcgcttaacgactctatcctttcagct
cttgatggtatgggttttgtttcaccaactccaattcaggctgctgctatcccgcaccta
ttggctggtaaagacgcactaggtaaagctcaaactggtactggtaaaactgccgctttc
tctctacctcttcttaataagctcgaccttggtcaacgtaagccacaagctatcgttctt
gcaccaactcgtgagctggcgattcaggttgccgctgagattaagaacctaggtaaaaat
attgctggccttaaagtgctagagatctacggtggtgcatctatcgttgatcaaatgcgc
gcacttaaaaacggtgctcacatcgttgtcggtacaccaggccgtgttcaagaccttatc
aaccgtgaccgtctacacctagatgaagtgcatacattcgtgcttgatgaagcagacgaa
atgttaaacatgggctttgttgacgatgtcactgaaatcatggagcacgctccagagtca
gcacaacgcgtactgttctctgcgactatgcctccgatgcttaagagcattgttgagcgc
ttcctacgtgatccagaaaccatcgacgttgccggtaaaaaccacaccgtagacaaagta
gaacagcagttctgggttgtgaaaggtgttgaaaaagacgaagcgatgtctcgtcttcta
gaaacagaagagactgacgcatcgatcgtattcgtacgtactcgtcaagataccgagcgt
ttggctgattggctatctgcacgcggctttaaagcagcggctctacacggtgacattcct
cagtcacttcgtgagcgcaccgttgaccacattaaacaaggcgtgatcgacatcttagtc
gcgactgacgttgttgctcgtggtctagacgtgccacgtattactcacgtattcaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgcgctgga
cgtaaaggtaaagcgatcctgttggttcgtactaaccaacttcgtatgctacgcactatt
gagcgcgtgactaagtcatcaatggaagagatccaacttcctcaccgtgacaaagtagcc
gaagcgcgtctagctaagctaggtgcagagctagaaactgaaaaagagcacaaagcactt
gagaagtttgctgagctagtcgacaagctacaagagtctcttgagctcgatgccgcagca
cttgcagccatcttgcttaagcgccaacaaggtaagcgcccactgttctacatcggcgaa
gacccaatgattgaagcgattgagcgcgacaaacagcgtcgtaaagagcgtcgtgaaggt
ggccgtgatggtcgtcgcgaaggcggtcgtagcttcaacaaccaagattgggatacgtac
caactgcaagtaggccgtgagcaaggcgttcaggttaaagatatcgtcggcgcactagct
aacgaacttggcctaaccaaaggctcaatcggtgctatcaaactagcacaaggcgaaact
tacgttcagctaccaaaagcgatgtcgtctgagacggcgggtaaactgcgtaagctgcgt
attcgtcagaagcaggtggatgcggttgtttgtgactttgatgatttccgcgaacctcgt
ggtcgccgtgatggcggtggccgtcgtgacggtggttaccgtggcaaccgtgaaggtggt
cgtcgtgaaggcggtttccgtggcaaccgtgaaggtggccgtggtggtcgcgacggtgaa
cgtcgctttgaccgcaaccgtggtggtgaccatcgcggtaactatcgcggtgaacgtggt
cacggccgtgaccgtcgcagcgaagcataa
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