Vibrio splendidus: LTQ54_01225
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Entry
LTQ54_01225 CDS
T08240
Symbol
sbcD
Name
(GenBank) exonuclease subunit SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
vsl
Vibrio splendidus
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_01225 (sbcD)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LTQ54_01225 (sbcD)
Archaeal homologous recombinant proteins
LTQ54_01225 (sbcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
DUF6761
Motif
Other DBs
NCBI-ProteinID:
UOE84675
LinkDB
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Position
1:complement(240536..241789)
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AA seq
417 aa
AA seq
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MKILHTSDWHLGQNFYNKSRKNEHERFLQWLLEQVTEHDIDAIIVAGDIFDTSTPPSYAR
EMYNKFVVDSNKIGCQLVLLGGNHDSVSVLKETQQLLKYMGADVIPNTNEDHATQVVELK
GKNGDVEALVCAIPFIRPRDVLTSQAGVTGVERQKQLGDAIKQHYQSVYDAAVEKRATFE
NSEHMPIIATGHLTAMGVQQSDSVRDIYVGNLDGFAADGFPDADYIALGHIHRPQVVAKR
EYIRYCGSPIPLSFDELKSQKQVCVVEFVEGERTISQLPVPTFQPLAEIKGDLSEIESQL
NQYIGLDSDQSVWLSIEVQAQDYLSDLQERMRALTEGLNVEVLQLRRARERRNQALEQES
AETLSELSPMDVFTKRIALEEFETDSEKARLERMTVKFKQVMVEVSERAQTPNKVEE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcttcacacgtccgattggcaccttggccaaaacttctacaataaaagccgt
aagaatgaacatgaacggtttttacaatggttacttgagcaagttacagagcacgacatc
gacgcgatcattgttgctggcgacattttcgataccagcacaccgccgagttacgctcgt
gagatgtataacaagtttgtggtcgattcgaacaagatcggctgccaattggtgttatta
ggtggaaatcacgattcagtctctgtgcttaaagagacacaacagctgctcaaatacatg
ggtgcagacgtgattcctaataccaatgaagatcatgcgactcaggttgtcgaactaaaa
ggcaagaacggcgatgtagaagcgctggtttgtgccattccttttattcgccctcgtgat
gtgttgaccagccaggcgggcgtcacaggcgttgagcgtcagaagcaactcggcgatgca
atcaaacagcactaccaaagtgtttatgatgccgctgtagaaaaacgtgcgacgtttgaa
aacagcgagcacatgccgattatcgctacgggtcatttaacggcgatgggtgttcaacaa
tcggattctgtacgcgatatctatgtcggcaaccttgatggttttgccgctgatggcttc
ccagacgcagactatattgcacttggtcatatccaccgtccacaagtggtggcaaagcgt
gaatacattcgttactgcggctcaccaataccattaagctttgatgaacttaaatctcaa
aagcaggtatgtgtggttgagtttgttgaaggcgagcgcaccatttctcaattgccagtt
ccaacgttccaacccctagctgaaatcaaaggcgacttgagcgagatcgaatctcaactg
aatcaatatataggcttagatagcgaccaaagcgtgtggttatcgatagaagtgcaagcg
caagattacttgtcggatcttcaagaacgtatgcgcgcactaaccgaaggtttgaatgtg
gaagtgcttcaattgcgcagagcaagagaacgtcgtaatcaagcattagagcaagagtca
gcagaaacgctgtcagaattgagcccgatggacgtgtttacgaagcgtattgccttagaa
gaatttgaaaccgattctgaaaaagcacgtttagagcgaatgacggtgaagtttaaacaa
gtgatggttgaagtgtctgaaagagctcaaacaccaaacaaagtagaagagtaa
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