Vibrio splendidus: LTQ54_02660
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Entry
LTQ54_02660 CDS
T08240
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
vsl
Vibrio splendidus
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_02660
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
LTQ54_02660
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GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SLFN-g3_helicase
SWI2_SNF2
AAA_22
DUF7577
DZR
zf-tcix
AAA_16
T1R_D3-like
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UOE84939
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Position
1:558577..560319
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AA seq
580 aa
AA seq
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MYTLRPYQADSVKSVIHYFRKHQTPAVLVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHEKYEGYGLKGSIFSAGLGRKETDQQVVFASVQSVVRNLDSFSNQFSLLVIDECHR
VPDEKTSSYQKVITHLRENNSGIKVLGLTATPYRLGMGWLYQYHTRGQVRSEEPRFFRDC
IFELPIRYLLDEGFLTPARMIDAPVLSYDFSQLKPASTGRYKEAELDMVIEQSKRATPQI
VDQIIELAKDKLGIMVFAATVRHAQEILGLLPEGESSIVIGDTPTLERDQIISDFKERKI
KFLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLSPGKKECLVLDYAGNSY
DLYQPEVGDPKPDSDSEIITIPCPACGFNNNFWAKLDSNGFLLEHFGRKCQGYFTDEDTG
EREHCNYRFRAKYCGECGADNDIAARICHECDATLVDPDKKLKEALNLKDALVFECLEMD
LNVLKDDKGKSQLKVTYRGENQAQVHEFWSLTTKKQKQNFKDQFVRPHLADRHRPFEEAS
PTKVVAHQHRFRPPQFVIARKVGRFWKMRDKIFEDELQQR
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtatacactccgcccgtaccaagctgattctgtaaaatcagtgattcattacttcaga
aaacaccaaacaccggctgttcttgtgttgcctacaggcgcagggaaaagccttgtgatt
gcagagctagcaagacttgcgaaaggtcgagtactggtactcgctcacgttaaagagttg
gtcgaacaaaaccatgaaaagtatgaaggttatgggctaaaaggctcaattttctctgcg
ggtttagggcgaaaagaaacagaccaacaagtggtgttcgcttcggttcaatctgtggtt
cgcaacctcgattcattctctaaccaattttcactgttggttatcgacgaatgccaccgt
gttcccgatgaaaagaccagtagctaccaaaaagtgatcactcacttgcgcgagaataat
tcgggcatcaaggtgcttggactaaccgcgaccccttatcgtcttggtatgggttggctt
tatcagtatcacacgcgtggacaagtacgatctgaagagcctaggtttttcagagattgt
attttcgagttgccgattcgctacttgttggacgaaggctttctaacaccagcacgtatg
atcgatgcgccagtattgagctatgacttctcacagctaaaacctgcaagtacaggccgc
tacaaagaagccgaactcgatatggtgattgagcaatctaaacgtgcgaccccacaaatt
gtcgaccagatcattgaactggccaaagacaagttagggatcatggtatttgctgccact
gttagacacgcacaagagatccttggcttactgcctgaaggtgaatcgtcaatcgtaatc
ggcgacacaccaactctcgaacgtgaccaaatcatcagtgacttcaaagaacgtaaaatc
aagttcttggttaacgtatcggtattaaccacaggttttgatgcccctcatgtcgattta
atcgcgattttacgcccgacagagtccatcagtttgtatcaacaaatcgttggccgtggc
ttacgcttatcgccgggtaaaaaagagtgtttggtgctcgactatgctggcaacagttac
gatctttaccaacctgaagtgggcgaccctaaacccgactcagacagtgaaatcatcacc
atcccctgcccagcatgcggcttcaacaataacttctgggccaagctagacagcaatggc
ttcttgctcgagcactttggccgtaaatgccaaggctactttaccgatgaagacacgggc
gaacgcgaacactgtaattatcgcttccgagccaaatactgcggtgaatgcggcgctgac
aacgacattgccgcgcggatttgtcatgagtgtgatgcaaccttggtcgacccagataaa
aaactgaaagaagcactgaacttaaaagatgcgttggtgtttgagtgtttagaaatggac
ttgaacgttcttaaagacgataaaggaaaatcacaacttaaagtcacttaccgtggcgaa
aaccaagcacaagtgcatgaattttggtcattaaccaccaagaaacagaagcagaacttt
aaggatcagtttgttcgccctcaccttgccgacagacaccgcccttttgaggaagcttca
ccaacgaaagtggttgctcaccaacatagattccgcccacctcaattcgtgattgcacgt
aaagtcgggcgtttttggaaaatgagagacaagatattcgaagacgagcttcagcaacgt
taa
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