Vibrio splendidus: LTQ54_06230
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Entry
LTQ54_06230 CDS
T08240
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vsl
Vibrio splendidus
Pathway
vsl03410
Base excision repair
vsl03430
Mismatch repair
vsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LTQ54_06230 (recJ)
03430 Mismatch repair
LTQ54_06230 (recJ)
03440 Homologous recombination
LTQ54_06230 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_06230 (recJ)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LTQ54_06230 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LTQ54_06230 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LTQ54_06230 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UOE85596
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Position
1:complement(1348947..1350683)
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AA seq
578 aa
AA seq
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MIEIQRRPEVDTSVLPAHLPDLLKRIYVSRGIDSADQLETAAKGLHSYQKLGGIDAAVEL
LFKAIQQQKRIIIVGDFDADGATSSALSVLALRMLGSSNVDYLVPNRFEDGYGLSPEVVE
QAIELGAEVIMTVDNGVSSIDGVRFAKEKGLDVLVTDHHLPGNELPIADAMVNPNLESCA
FPSKALAGVGVAFYLMMALCVHMRKLGWFAQHGMTEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEIAKRDAKRLVASDFGFALGPRINAAGRLDDMSFG
VELLMSNNIHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLEFGKDDLPSGLALFQR
DWHQGVIGILASRIKDKYHRPVIAFADGGEGSIKGSCRSIPGLHMRDALDRIDTQNPGLI
LKFGGHAMAAGLTIMEKDFERFSKMFDDVVRKELGETALKGIILSDGELLPEEFSMHTAE
TLRSGGPWGQAFPEPIFDGEFKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNVDL
RRWPDASVKTVHLAFKLDINEFRGNQSLQLMVDHIEAK
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgatagagatccaacgccgtcctgaggtcgacacttcagtcttacctgctcacttacct
gacttgttaaagcgcatttatgtgagtcgcggaatcgacagtgctgaccaactagagaca
gcagcgaaaggcttgcactcttatcaaaaactgggcggcattgatgctgcggttgaattg
ttgttcaaagccattcagcagcaaaaacgcatcatcattgttggtgactttgatgccgat
ggcgcaaccagttcggcgttgtctgtgcttgctctgcgtatgttgggcagctctaacgtt
gattatctagtaccaaaccgttttgaagatggttatggcttgagccctgaggttgtcgaa
caggcgatcgaacttggtgctgaagtgatcatgaccgtggacaacggtgtctcttcgatt
gacggtgtccgtttcgctaaagagaaagggctagacgttctggttactgatcatcactta
ccgggcaatgaactgccaatcgccgatgcgatggtcaatccgaacctagaaagctgtgca
tttccttcaaaagcgctagcgggtgttggcgtcgccttttatctgatgatggcgttgtgt
gttcacatgcgtaagttgggttggtttgctcaacacggtatgacagagcccaagttgatg
gaactgattgacctagtggcactgggtactgttgcggatgtggttccacttgatgaaaat
aaccgaatcttggtgcaccaagggctacaacgcattcgtgcgggcaaagctcgtccgggt
attcaagccttgattgaaattgctaagcgagatgctaagcgtttggttgcctccgatttt
ggttttgcgcttggtccacgtatcaatgcggcaggccgattggatgacatgtcttttggt
gttgagctgctaatgagtaacaacatccatgccgcgcgtcgaatggccagcgagttagat
ggcttgaaccaaacacgtaaagagatcgaagagggcatgaaacaagaagcgatggctttt
tgtgagcgccttgaatttggtaaagacgatttgccttctggtttggcgctgtttcaacgt
gattggcaccaaggcgtcatcggtattctcgcttcgcgtatcaaagacaaatatcaccgc
ccagtgatcgcatttgctgatggtggtgaaggcagcatcaagggttcatgtcgttcgatt
ccaggtttgcacatgcgcgatgcgctagacagaatcgatactcaaaaccctggcttgatc
ttgaagtttggtggtcacgcaatggctgctggcttaaccattatggaaaaagacttcgag
cgattcagcaagatgtttgatgacgttgtgcgtaaagaactcggtgagacggcacttaag
ggcataatcttgtctgatggtgagctgttacctgaagagttctcaatgcataccgctgag
acgttgcgttcaggtggtccttggggccaagctttcccagaaccgatctttgatggtgaa
tttaaagtgctgcatcaaaaactggtaggtgaaaaacaccttaaattgatgctagaacct
ctatacaaaggccacccaaccaacgtgatgattgatggtattgctttcaatgttgattta
cgtcgttggcctgatgcgtccgtgaaaacggttcaccttgcatttaagctggatatcaac
gagtttcgtggcaaccaatcgttgcagttgatggttgaccatattgaagccaaatag
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