Vibrio splendidus: LTQ54_06725
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Entry
LTQ54_06725 CDS
T08240
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vsl
Vibrio splendidus
Pathway
vsl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LTQ54_06725 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsl03021
]
LTQ54_06725 (rpoD)
Transcription machinery [BR:
vsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LTQ54_06725 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
UOE85690
LinkDB
All DBs
Position
1:1470538..1472382
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AA seq
614 aa
AA seq
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MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALNDDDANIDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINTVQLSVAEYPGTIPYILEQFDRVLAEEIRLTDLINGFVDPDDDGTAAPTA
THIGSELAKTDLEDEDKEEAEDDEEEEEEDTGIDPELALEKFTALRTSYQNRQLAINEYG
HESPKATLATTMMQDVFKEFRLTPKQFDYLVNELRTSMDRVRTQERLIMRQTVEYGKMPK
KSFIALFTGNESSEAWLDEVLASDKPYAEKIKRNEHDIRRSIQKLDIIERETSLTVQSIK
DISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPL
PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS
LRGATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSETLRSFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaaattacttgttattaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaacgaccacctacctgcagaaatcgtggattctgaacag
gtagaagacatcattcaaatgatcaatgacatgggtatcaaggtagtagaaactgcacct
gacgctgatgatctagctcttaatgatgacgatgccaatatagatgaagatgcagctgaa
gctgctgctgctgcgctttcaagcgtagaaagcgagattggccgtacaactgacccagtt
cgtatgtacatgcgtgaaatgggtacagttgaactactgactcgtgaaggcgaaatcgac
attgcgaagcgtattgaagatggtatcaataccgttcaattatctgttgctgagtaccca
ggcacgattccatacatcttggaacagtttgaccgcgtactcgctgaagagattcgctta
acagatctaatcaatggctttgttgacccagacgacgatggcacagctgcgccaacggcg
actcacatcggttcagagctcgctaaaactgatctagaagacgaagacaaagaagaagca
gaagacgacgaggaagaagaagaggaagatacaggtattgatcctgagcttgctcttgag
aagttcacagcgcttcgcactagctaccaaaaccgtcaactagcaatcaatgaatacggc
cacgaaagcccgaaagcaacgcttgcaacaacaatgatgcaagacgtattcaaagaattc
cgtctgacgccaaaacagtttgattacctagtaaacgaactgcgtacttcgatggatcgc
gtacgtactcaagaacgcctaatcatgcgtcaaacggttgagtacggcaaaatgccgaag
aaatctttcattgctctatttactggcaatgaatctagcgaagcatggttggacgaagtt
cttgcttcagacaagccatacgcagaaaagatcaaacgtaacgaacacgacatccgtcgc
tctatccaaaagctggatatcatcgaacgtgaaacgtctcttactgttcaaagcatcaaa
gatatcagtcgtcgtatgtctatcggtgaagcgaaagctcgtcgtgcgaagaaagagatg
gttgaagcgaacttacgtctagtaatctcgattgctaagaagtacacaaaccgtggtcta
caattcctggatctaatccaagaaggtaacatcggtctgatgaaagcggtagataagttt
gaataccgtcgtggttacaagttctctacttacgctacgtggtggatccgtcaagcaatc
actcgttcgattgccgaccaagctcgtactatccgtattccggttcacatgatcgaaacg
atcaacaaactaaaccgtatctctcgtcaaatgctacaagagatgggtcgtgaaccgctt
ccggaagagttggctgagcgcatgcaaatgcctgaagacaagatccgtaaagtactgaaa
attgctaaagagcctatctcaatggagacaccaatcggtgacgacgaagattcgcatcta
ggtgatttcatcgaggatacaacgctagaactgcctttagactctgcaacggcaacaagc
ctacgcggcgcaactaaagacgttcttgcaggcctaacacctcgtgaagcgaaagtactg
cgtatgcgtttcggtatcgacatgaatactgaccacactcttgaagaggttggtaaacag
ttcgacgtaactcgtgaacgtatccgtcagatcgaagcaaaagcactgcgtaaacttcgt
cacccaagccgctcagaaactctgcgtagcttcctagacgagtaa
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