KEGG   Vibrio splendidus: LTQ54_07380
Entry
LTQ54_07380       CDS       T08240                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
vsl  Vibrio splendidus
Pathway
vsl02024  Quorum sensing
vsl03018  RNA degradation
vsl05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vsl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LTQ54_07380 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LTQ54_07380 (hfq)
   05111 Biofilm formation - Vibrio cholerae
    LTQ54_07380 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vsl03019]
    LTQ54_07380 (hfq)
   03036 Chromosome and associated proteins [BR:vsl03036]
    LTQ54_07380 (hfq)
Messenger RNA biogenesis [BR:vsl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LTQ54_07380 (hfq)
Chromosome and associated proteins [BR:vsl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LTQ54_07380 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UOE85800
LinkDB
Position
1:complement(1632514..1632780)
AA seq 88 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARAVSHHSGEQQRAPSDRPEKTED
NT seq 267 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatcgctacaagacccattcctaaatgcactccgtcgtgagcgcatt
ccagtctctatctatcttgttaacggcatcaagctgcaaggtcagatcgagtctttcgat
caattcgtgatcttattgaagaacacagtaaaccaaatggtttacaagcatgcgatttct
actgtggttcctgctcgtgcagttagtcatcacagcggcgagcaacagcgtgcgccatct
gatcgtccagagaagactgaagattaa

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