Vibrio splendidus: LTQ54_07380
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Entry
LTQ54_07380 CDS
T08240
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
vsl
Vibrio splendidus
Pathway
vsl02024
Quorum sensing
vsl03018
RNA degradation
vsl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTQ54_07380 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LTQ54_07380 (hfq)
05111 Biofilm formation - Vibrio cholerae
LTQ54_07380 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsl03019
]
LTQ54_07380 (hfq)
03036 Chromosome and associated proteins [BR:
vsl03036
]
LTQ54_07380 (hfq)
Messenger RNA biogenesis [BR:
vsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
LTQ54_07380 (hfq)
Chromosome and associated proteins [BR:
vsl03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
LTQ54_07380 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
UOE85800
LinkDB
All DBs
Position
1:complement(1632514..1632780)
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AA seq
88 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARAVSHHSGEQQRAPSDRPEKTED
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatcgctacaagacccattcctaaatgcactccgtcgtgagcgcatt
ccagtctctatctatcttgttaacggcatcaagctgcaaggtcagatcgagtctttcgat
caattcgtgatcttattgaagaacacagtaaaccaaatggtttacaagcatgcgatttct
actgtggttcctgctcgtgcagttagtcatcacagcggcgagcaacagcgtgcgccatct
gatcgtccagagaagactgaagattaa
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