Vibrio splendidus: LTQ54_09630
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Entry
LTQ54_09630 CDS
T08240
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LTQ54_09630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsl03021
]
LTQ54_09630 (rpoC)
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_09630 (rpoC)
Enzymes [BR:
vsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LTQ54_09630 (rpoC)
Transcription machinery [BR:
vsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LTQ54_09630 (rpoC)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LTQ54_09630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UOE83239
LinkDB
All DBs
Position
1:2106832..2111034
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDTIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLSTMDLHQEVEEMREELETTNSETKRKKVTKRLKLVEAFISSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGMATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLAGPAEAEKAYRTK
TAELHARVKVRITETVVDEDGNSTTNTGLVDTTVGRAMLWQIVPKGLPYSIVNQKLGKKQ
ISTLLNECYRKLGLKDTVVFADQIMYAGFAYAALSGVSVGINDMVVPQAKYDEIESAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMDNLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGIDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEDNSVDSMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVINKDKKLVITSRASEMTIIDEFGRTKEKHKLPYGSMLTKGDNAAVTAGEVVANW
EAHTMPIITEVAGRIQFVDMIDGITVSRNTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEQGNDVMIPGTDMPAHYFLPGKAIVNIEDGAEVGIGDTLSRIPQKSSGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKIERGDVIADGPETPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHSGDSPFLPGEQVEYHNVKIANRKLEAEGKELVRFERDLLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQERQKQREEEQEGPS
AEQATDNLAALLNAGFSSEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacacgatccgttcgtggtcttttggtgaagttaaaaag
ccagaaacaattaactatcgtacgttcaaacctgaacgtgatggtctgttctgtgcacgt
atttttggtccagttaaagactacgaatgtctttgtggcaaatacaagcgcctgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcacta
ccgtctcgtatcggtctactaatggatatccctctgcgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaatctcagatgctt
actgaagaagagtatctggatcgtctagaagagtggggtgacgaattcactgctaagatg
ggtgctgaagcgatcaaagatctgctttcaacaatggaccttcatcaagaagtggaagaa
atgcgcgaagagttggaaacaactaactctgaaactaagcgtaagaaagttactaagcgt
ttgaagctagttgaagcgttcatctcgtcaggcaacaagcctgagtggatgatcctaact
gtacttccagtgctaccgccagatcttcgtcctctagtacctctagatggcggtcgtttt
gcgacttcagatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcggctccagacatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgttgatgcccttctagataacggtcgtcgcggtcgtgcgatcacgggttctaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacatcagtgtggtcttcctaagaagatggcacttgagctatttaagccgttc
atctacagcaagctagagactcgtggcatggctacgacaatcaaagctgctaagaaaatg
gtagagcgcgaagaagcgatcgtttgggatatcctagacgaagttatccgtgaacaccca
gtactgcttaaccgtgcacctacacttcaccgtctaggtatccaagcgtttgaaccagta
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcatacaacgccgac
ttcgatggtgaccaaatggctgtacacgtgcctctaactctagaagcacagcttgaagct
cgtaccctaatgatgtcgacgaataacattctgtcgccagcatcaggtgatccgatcatc
gtaccttctcaggatgttgtattgggtctttactacatgacacgtgacaagatcaacgtg
aaaggtgaaggtatgtaccttgctggccctgctgaggctgaaaaggcataccgtactaag
actgctgagctacatgctcgcgttaaagtacgtatcactgaaacagtagtagacgaagac
ggcaatagcacaacgaatactggcctagtagatacgactgtaggtcgtgcaatgctatgg
cagatcgttcctaaaggccttccgtacagcatcgttaaccaaaagttaggtaagaagcag
atctctactcttcttaacgagtgttaccgtaagcttggtctaaaagatacagtagtattt
gctgaccaaatcatgtacgcaggtttcgcatacgcggctctttctggtgtttctgtaggt
atcaacgatatggttgttcctcaagcgaaatacgacgagattgaatctgctgaagaagaa
gttcgtgaaatccaagagcaattccaatctggtcttgttactgcgggtgagcgttacaac
aaagttatcgatatctgggcatctacgaatgaccgcgttgcgaaagcaatgatggataac
ctatcttctgaaacagttattaaccgtgacggcgaagaagaacagcaagaatcgttcaac
agcatctacatgatggccgactcgggcgcacgtggttctgcagctcagattcgtcagcta
gcaggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtccttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcactgaaaacagcaaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgtagtacacgaacatgactgtggcacgcatgaaggtatc
gacatgatgcctcacatcgaaggtggtgacgttaaagttgcactttctgagcttgctctt
ggtcgtgttgttgctgaagatgttcttaagcctggtactgaagatgtactgattccacgt
aatactctgattgatgagaagtggtgtcaaatcatggaagacaactcagtagatagcatg
aaagtgcgctctgttgttacctgtgatgcagacttcggttgttgtgcacagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagttggtgttatcgctgca
caatctatcggtgaaccgggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagcgaagacaactggtactgtgaagctt
cacaatgctaagttcgtaattaacaaagataagaaactggttatcacttctcgtgcatct
gagatgacgattattgatgaattcggccgtacgaaagagaagcacaaacttccttacggt
tcgatgctaaccaaaggcgacaacgcagcagttactgctggtgaagttgtagctaactgg
gaagcgcataccatgccaatcatcactgaagtggcaggtcgtatccaattcgtagatatg
atcgatggtattacagtttctcgtaacactgacgatctaacgggtctttcttcaagtgaa
gttacagacgcagcagctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgagcaaggtaacgacgtaatgatccctggtactgatatgccagctcactacttc
ctacctggcaaagcgattgtaaacatcgaagatggcgctgaagttggcattggtgacaca
ctatctcgtatccctcaaaaatcgagcggaaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagcctaaagagcctgcgatccttgctgagcacaca
ggtactgtgtctttcggtaaagaaacgaaaggtaagcgtcgtctagtaatcactcgtgaa
ggcggtgacgcttacgaagagatgattcctaagcatcgtcaattgaacgtgttcgaaggt
gagaagattgaacgtggtgatgtaatcgccgacggtcctgaaactccacacgatatcctg
cgtctacgtggtatccacgcagtaactcagtacatcgcgaacgaagttcaagaagtttac
cgcttacaaggcgtaaagattaacgataagcacatcgagactatcgttcgtcaaatgcta
cgtaagtgtacaatcactcattctggtgactctccgttcctacctggcgaacaagttgag
taccacaatgttaagattgctaaccgtaagctagaagctgaaggtaaagagctagtacgt
ttcgaacgtgatctactaggtattactaaagcatctcttgcaactgagtcattcatctca
gctgcatcgttccaagaaacgactcgcgtactaacagaagctgcggtttctggtaagcgt
gatgaccttcgcggtctgaaagagaacgtaattgttggtcgtctgatcccagctggtact
ggtttcgcataccaccaagagcgtcaaaagcaacgtgaagaagagcaagaaggtccttca
gctgaacaagctactgacaatctagcagcacttctaaacgctggtttctcttcagaagag
taa
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