Vibrio splendidus: LTQ54_10615
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Entry
LTQ54_10615 CDS
T08240
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vsl
Vibrio splendidus
Pathway
vsl02020
Two-component system
vsl02040
Flagellar assembly
vsl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LTQ54_10615
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
LTQ54_10615
09142 Cell motility
02040 Flagellar assembly
LTQ54_10615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsl03021
]
LTQ54_10615
Transcription machinery [BR:
vsl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LTQ54_10615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
UOE83430
LinkDB
All DBs
Position
1:complement(2310514..2311974)
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AA seq
486 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLDVEEGNEDTPTSE
EKPSSDEKETVEATEQDLPDSSDLIEKSEIGNELEIDTTWEDVYSANTGNTGIAIDDDMP
VYQGETTQSLHDYLLWQLDLTPFSETDRSIAFALIDAIDDYGYLTVSCEDILENFDSEEV
ELDEIEAVRKRVQQFDPLGVGSVNLQDCLLLQLATFPLDTPWLNEAKLVLTSHIDQLGNR
DYKLVIKETKLKEAELREVLQLIQQLDPRPGSKITPDETEYVVPDVTVFKDLGKWLVTIN
PDSVPKLKVNQQYAALGSKGSSADNQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQ
RDFFEHGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVSTDN
GGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPSS
QRKRLL
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaacttaagctaggccaacagttagcaatgactcctcaattgcag
caagcgattcgtttgttgcaattgtctactttagatttgcagcaagagattcaagaagca
cttgaatctaatccactactcgatgtcgaagaaggcaatgaagatacgcctacatcggaa
gagaaacctagcagtgacgagaaagaaacagttgaagccacagagcaagatttacctgat
agttcagacttaatcgaaaaatcagaaattggcaacgaactagaaatcgacacaacttgg
gaagacgtctacagcgccaacacgggtaacactggtattgcgattgatgacgacatgcct
gtttatcaaggcgaaaccactcaaagcctacacgattacctactttggcaactcgaccta
acaccattctctgaaactgaccgaagcattgctttcgcgctgattgatgccattgatgac
tatggctacctcaccgtatcttgtgaagatatccttgaaaacttcgatagcgaagaagta
gagcttgatgagattgaagccgtccgcaaacgagttcagcagtttgacccgctgggtgtc
ggttcagtgaacctacaagattgcttgttactgcaactggcaacctttcccctagatacc
ccttggcttaacgaagctaagttagtacttactagccacatcgaccaactcggtaaccgc
gattacaaattagtcatcaaagaaaccaagctgaaagaagcggaactacgtgaggttctg
cagctgattcagcaactggatcctcgacctggcagtaagattacaccggacgaaactgaa
tatgtggttccagacgtaacggtgttcaaagatcttggaaagtggttagtcaccattaac
cctgatagtgtccctaagctgaaagtaaatcagcaatatgccgctcttggtagcaagggc
agcagcgcagataaccaattcattcgctcaaatttgcaagaagcaaaatggctaatcaaa
agcttagaaagccgaaatgagacgctactcaaagttgcgcgatgcattgttgaacatcag
cgtgatttcttcgaacatggcgaagaagcgatgaagccaatggttctgaatgatgttgcg
ttagccgttgatatgcacgaatccacgatctctcgtgtgacgactcaaaaattcatgcac
acgccacgtggcatcttcgaactcaaatactttttctcaagccatgtcagcactgacaat
ggcggtgaatgttcatctacagcaattcgcgcactgattaagaagcttgtcgcagcggaa
aataccgcgaagcctctcagtgatagtaagattgctgctttactggctgaccaaggaatt
caggtagctagacgtaccatagcgaaataccgtgagtctctgggcattgccccatcgagt
cagcgtaaacgcctgctataa
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