Vibrio splendidus: LTQ54_11200
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Entry
LTQ54_11200 CDS
T08240
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vsl
Vibrio splendidus
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vsl03009
]
LTQ54_11200 (rlmD)
Enzymes [BR:
vsl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LTQ54_11200 (rlmD)
Ribosome biogenesis [BR:
vsl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LTQ54_11200 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
PCMT
Methyltr_RsmB-F
RrnaAD
Methyltransf_23
Methyltransf_15
DREV
Wtap
TPMT
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
UOE83520
LinkDB
All DBs
Position
1:2415252..2416571
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AA seq
439 aa
AA seq
DB search
MARFFQPKKKTQLETKHQSVLVERMDHNGAGIAYQKNKPVFIDGALPGEQVVIQLTESKS
KFSRAKLIKLLKPSELRLKPFCKHFNQCGGCHLQHLGYASQVEHKSQSLTHLMSQYQTAN
TEVVEPIVGDETGYRRRARISLFVDKKTQQLQFGFRKKQSKQIENITDCAVLDPRLNVLL
PKLKSLLNTFSNLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALIALAKAEGATLYTM
PETDKLVRLVGDAPVYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDL
FCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATSNATLNQLSNTEFYQANLEEELSSQPWA
KERFDKILLDPARAGASGIVDQISGLGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGM
LDMFPHTSHLESMALFIKA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacgttttttccaaccaaaaaagaaaactcaactcgagaccaagcatcaatcggtt
ttggttgaacgaatggatcacaatggcgctggcatcgcttatcagaagaataaacctgtt
ttcattgatggcgcattgcccggtgagcaggtggttattcaacttactgagagcaaaagt
aagttttcgcgagcaaaactcatcaaattacttaaaccgagtgagctgcgtttaaagcca
ttctgtaagcactttaatcagtgtggtggctgtcaccttcaacatcttggttacgcttct
caggttgagcataaatcgcaatctttgacgcacctcatgagtcaataccaaacggctaac
accgaagttgttgagccgattgtgggtgatgaaaccggttatcgacgtcgcgcgcgtatc
agcctgtttgttgataagaagacacagcagcttcagttcggtttccgtaagaaacaaagt
aagcagattgaaaacatcaccgattgtgccgtgctggatcctcgccttaatgtattgctg
ccaaaactgaaaagtttactcaatactttcagcaaccttacgtctttaggacacgttgaa
ttggtgttgggcgatactggccctgtgatggtgctgcgtcaccttaagcctttggttgag
aaagatgagcaagcattgattgcactcgctaaagcggaaggtgccacgttgtatactatg
cctgaaacggacaagctcgttcgtttggtcggtgatgcgccagtttatagcgaaacaggc
gtgactttaccttttgagccaaaccactttatccaagttaaccagaaagtgaaccagcaa
atggttgctcaagcgattgagtggctagagcctcaagctgatgagcgagtgctcgatctg
ttttgtggcttagggaacttcagtttgcctattgcacaacaatctgcgtttgtagtgggt
gttgaaggtgtcgatgaaatggttcaacaggccacgtctaacgcgactttgaatcaattg
agtaatacagaattctaccaagcgaaccttgaagaagagctgtcttcacagccttgggca
aaagaaagatttgataaaatcttacttgatccagcgcgtgctggagcgagtgggatcgtt
gatcaaatttcagggttaggtgcgaagcgtgtggtttatgtttcgtgtaatcctgctact
ctagctagagattcagagagcttagaaaaacaaggctatcaattagccaagcttggtatg
ttggacatgttcccacacaccagtcatctagaatcgatggctctctttatcaaggcttag
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