Vibrio splendidus: LTQ54_12615
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Entry
LTQ54_12615 CDS
T08240
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03030
DNA replication
vsl03430
Mismatch repair
vsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTQ54_12615 (dnaE)
03430 Mismatch repair
LTQ54_12615 (dnaE)
03440 Homologous recombination
LTQ54_12615 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsl03032
]
LTQ54_12615 (dnaE)
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_12615 (dnaE)
Enzymes [BR:
vsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LTQ54_12615 (dnaE)
DNA replication proteins [BR:
vsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LTQ54_12615 (dnaE)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LTQ54_12615 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UOE83782
LinkDB
All DBs
Position
1:2737335..2740814
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHGC
GVKPIIGADFLMQSPDFGDELTKLTVIATNNKGYNNLTLLISKAYLRGHVQHQPVIDKEW
LIEHAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYLELIRTGRPDEES
YLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDPRRPKNYSSQQYL
RSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGLAIEDFLIKKSEEGL
ERRLAFLFPDEKIRAERRPEYDERLKIELEVVNNMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFLAEPA
LPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKEPVRIESIPLDDQASFNLL
QNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYRFNVDEDGAIVYGIGAIKG
VGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKLILSGALDRLGPHRAAMMA
SLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVPKWPEKVWLEGERETLGLY
LTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLFSDALDRYAELLEKDKIVVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGVSISIDQSQINGQFFERFSQILEPYRAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDELKQLLGNSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccaaaatttgttcacctacgcgtacacagtgatttttcgatggtggatggc
ctctctaaggtgccaccattagttaaaaaagtcgctgaaatgggtatgcccgctctagca
ttgaccgactttactaacctatgtggcttggtgaaattttacggtactgcccatgggtgt
ggggttaagccaattattggtgctgacttcttgatgcagtctccggattttggcgatgaa
ttaaccaagctcactgttattgcaacgaataataaaggttataacaacctaacattattg
atttcaaaagcttaccttcgtggtcatgttcaacatcagccagttattgataaagagtgg
ctgattgaacatgccgaaggcctgattcttctatcgggagcaaaagagggtgagattggt
aaggcgttgctgaaaggcaatcgagagttggttgcaagcagcgttgagttttacaaaaca
catttcgcagaccgtttttatctggagctcattcgtactggacgcccggatgaagagtcg
tatctgcactttgcgctagagcttgctgaacaagaagacctgcctgttgtcgcgaccaac
gaagtggttttcatatctgaagacttgtttgacgcccatgaaattcgtgtggcgattcac
gacggttttacaatggttgatccacgtcgaccgaaaaactacagctcacaacaatacttg
cgtagtgaagaagagatgtgtgagttgttctcagacatccctgaagcactggaaaacagt
gtcgagattgctaagcgttgtaacgtaacagttcgactgggcgaatacttcttacctaac
ttcccaacggaaggtttggcgattgaagacttcttgattaaaaaatcagaagaaggcctt
gagcgtcgtttagcgtttctattccctgatgagaaaattcgagctgaacgcagacctgaa
tacgatgagcgacttaagattgaacttgaagttgtcaacaatatggggttcccgggttac
tttttgatcgtaatggagttcatccagtggtcaaaagataacgacgtaccagtaggccca
ggtcgtggttctggtgccggttctttggtggcttacgcattggatatcaccgatcttgat
ccacttgaatatgacttgctgttcgaacgtttcttgaacccagaacgtgtatctatgccc
gatttcgatatcgacttctgcatggataaacgcgaccaagttattgatcacgtagccgag
atgtacggtcgtgatgccgtttctcagatcatcacctttggtactatggcggcaaaagcg
gtaattcgtgacgttggtcgtgtattgggccacccgtttggtttcgttgaccgtatttct
aagctggttccgcctgatccgggcatgacgctagagaaggccttccttgctgagccagca
ttgccagaactctacgacggtgatgaagaagtacgcgaactgattgataagtgtcgtatt
cttgagggttgtacgcgaaatgccggtaagcacgcgggtggtgttgttatctcaccaacc
acgatcactgactttgcacctatttatgccgatgcggaaggcaacttcccggtaacgcaa
ttcgataagaatgacgttgaaaccgccggtttggttaagtttgacttcttgggtctacgt
accctgactatcatcgattgggcgttaggcctcgtaaacccacgcttgaagaaagagggt
aaagagccggttcgtattgaatcgattcctctagatgaccaagcgtcatttaacctatta
caaaattctgaaacgacggcggtattccaactggaatcacgcggtatgaaagatctgatt
aagcgtctacaacccgactcttttgaagatatcatcgcattggtggccttgttccgtccg
ggccctctgcaatcaggcatggtagataactttatcgaccgtaaacacggacgagaggct
gtatcttaccctgatgaaacgtggcaacacgagtcgttaaaagaaacactagaacctacg
tacggcatcatcctgtatcaagaacaagtaatgcaaatcgctcagatccttgcgggttat
acgcttggtggagccgatatgttgcgtcgtgcgatgggtaagaaaaagcctgaagagatg
gcaaaacagcgcggtaccttcaaagaaggtgctgaagccaatggtgttgatggcgaactg
tccatgaagatctttgacttggtagagaagtttgcgggctacggctttaacaaatctcac
tcggctgcatacgcactggtttcttatcaaacgctatggctgaaaacccattacccagcg
gagtttatggcagcggtaatgaccgcagatatggataacaccgaaaaggttattggcctt
gtcgatgagtgtttccgtatgaagctcaagctccttccacccgatatcaactcgggtcta
taccgctttaatgtcgatgaagacggcgcgattgtttatggcatcggtgcgattaaaggg
gtgggtgaaggccctattgaagccatcattgaagcgcgaaataaaggcggttactttaaa
gatttattcgacttctgtgcacgacttgatctgaaaaaagtgaacaagcgtgttatcgaa
aagttgattctgtcgggcgccttagatagattaggtcctcaccgagcggcaatgatggca
tcattgaaagatgcggtgaaggcggcgagccaacatcaccatgccgagtcgtttggtcaa
tcggatatgtttggcgtgttgactgacgctccggaagaggttgaacacaagtatacccaa
gtaccgaagtggcctgaaaaggtttggcttgaaggtgagcgtgagacgttaggtttgtat
ttaacaggtcacccggttaatgcgtacattaaagagctcgcgaaatacactagctgtcgt
ttaaaagacgctacgccaactcgtcgtgaccagtctttaacgattgcaggtttggttatt
gctgctagggtaatgaccacgaagcgcggaactcgaattggtttgatgaccctcgacgac
cgatcggggcgaatggaagtaatgttgttctcggatgcacttgatcgttacgctgaattg
ctcgaaaaagataaaatagtggtcgtttctggacaggtcagctttgatgatttcaatggt
gggcttaaaatgtccgcgcgcgaggtcatggacttaggaagcgcccgtgagaaatatgct
cgtggggtgtcgatatctatcgaccaatcccaaattaatggtcaattttttgaacgcttt
agtcaaatcttagagccttatagagccggaacggtcccagtcaatgtatactaccagcgt
gccgacgctagagcgcggttaacattgggcacagaatggcgtgtgacgccaagtgataca
ttactagacgaattaaaacagctgcttggaaatagccaagtagaactcgaatttaactaa
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