Vibrio splendidus: LTQ54_13670
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Entry
LTQ54_13670 CDS
T08240
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10912
two-component system, repressor protein LuxO
Organism
vsl
Vibrio splendidus
Pathway
vsl02020
Two-component system
vsl02024
Quorum sensing
vsl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LTQ54_13670
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LTQ54_13670
05111 Biofilm formation - Vibrio cholerae
LTQ54_13670
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
vsl02022
]
LTQ54_13670
Two-component system [BR:
vsl02022
]
Lux family
LuxQN/CqsS-LuxU-LuxO (quorum sensing)
LTQ54_13670
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
Mg_chelatase
AAA_16
AAA
AAA_2
AAA_19
AAA_22
HTH_29
HTH_23
PIF1
HTH_7
Motif
Other DBs
NCBI-ProteinID:
UOE83978
LinkDB
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Position
1:2966668..2968056
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AA seq
462 aa
AA seq
DB search
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILL
DLRLPDMTGMDVLFAVKQKYPEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRI
TVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFITGESGTG
KEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRF
REDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEW
PGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSLRLKEKQNEDITVKDIFPLWI
TEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcaaaaacgctagataacaaatcgaagtatttgttgatggtagaggataccgct
tcggtagcagctttatatcgctcgtatcttacaccgctcgaaattgatatcaacattgtc
ggtactggccgcgatgcaatcgagagtttgaatcatcgaatcccagaccttattttatta
gatctacgtctgcctgatatgacgggtatggacgtgctatttgctgtaaaacaaaaatac
cctgaagttccggttatcttcatgacggctcacggctctatcgatactgctgtagaagcg
atgcgtcatggttctcaagatttccttatcaaaccgtgtgaagccgaccgactccgtatt
acggtgaacaacgcgatccgcaaagccaccaaacttaaaaacagctcggaacatccggga
aaccaaaactatcaaggtttcattggcagtagccaaaccatgcagcaggtttaccgaact
atcgactctgcagcatcgagtaaagccagtattttcatcacgggtgaaagtggtaccggt
aaagaggtatgtgcagaagctattcatgcggcgagcaagcgtggtgacaagcctttcatc
gcgattaactgtgcggctatccctaaagatctaattgaaagtgagctatttggccacgtt
aaaggcgcctttaccggtgctgcaactgatcgtcaaggtgccgctgaacttgctgatggc
ggaacactattccttgatgaattgtgcgaaatggacttagagctgcaaaccaagctgctg
cgctttatccaaaccggtacttttcaaaaagttggctcttcgaagatgaagagtgtcgat
gttcgtttcgtatgtgcaaccaaccgtgacccttggaaagaagtacaagaaggtcgcttt
agagaagatttatactatcgtttatacgtgattccattgcacctgccgccattgcgcgag
cgcggtgaagatgtcatcgagattgcgtactcgttactaggctacatgtcggttgaggaa
ggtaaggcgtttgtgcgttttgctcaggaagtgcttgatcgctttaatcaatatgagtgg
ccgggtaacgttcgtcagctacaaaacgtattacggaacgtggtggtattgaataacggc
aaagagattactctcaacatgcttccaccaccattgaaccaaccgattgaaaacagcttg
cgcttgaaagagaagcagaacgaagacatcacggtaaaagatattttcccattgtggatc
actgagaagacggctatcgaacaggccataaaagcgtgtgacggcaacattccccgcgcg
gccggtttcttagatgtcagtccatcgacgatataccgtaagttgcaaacgtggaatgcg
aagcagtaa
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