Vibrio splendidus: LTQ54_13840
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Entry
LTQ54_13840 CDS
T08240
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTQ54_13840 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsl03019
]
LTQ54_13840 (rne)
03009 Ribosome biogenesis [BR:
vsl03009
]
LTQ54_13840 (rne)
Enzymes [BR:
vsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LTQ54_13840 (rne)
Messenger RNA biogenesis [BR:
vsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LTQ54_13840 (rne)
Ribosome biogenesis [BR:
vsl03009
]
Prokaryotic type
rRNA processing factors
LTQ54_13840 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UOE84012
LinkDB
All DBs
Position
1:complement(3006647..3009850)
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLREGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASDSNAAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
QAHIQLIRPDFMNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVES
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIEKNQEVKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLLPTKLEALKEAESKEPVEQTIRPKKIEEPALKGFAAPAQSA
PTPAPAPKAVEEKKVEPAATQEPSLIGRFFKAIGSFLFGSSTQEEKKEEEKQEEKPKNNR
NNGNRQRRDRNDNRRRNQRGDRSEQRNERGDRSEQRNERGDNRNENRDNKRRRKPVRDEK
PEEQKEAAPQQTRQPRKPKQDRRNKPRDEQKQQEEQVPSKLAEEGLQLAAEAQADKPEAP
KAKPEAKAVKIKERRQRRKLNKLVRVKDQQAQAEADNNADNASKEQKAQTANHEQAVAQE
QKVVEQVEATQVNAEQTEQEEPKQRRNRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVA
SPEMAMGKVMPRFIPKPHHNQTKPEVAEMDVAVEAQVATETQVAAQAPEQNTAQENAPQS
NVVMAGGFACPELAMGKVIISREDAVVAEETRSEAQVTEAPVVVEEAPVIVETEKVEAPV
IVEATKVEAAVAVEETTPVVEAEAPKAESAKVEEAPVVKAEALQAAPKATVAKKQAGSPM
TKAPGPQEIKEIEVVAAPFRNERFVPKGAGSQAASNQAGAGMTKPNY
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgactgttcgatctagatatcgaaagtccaggtcacgagtcaaagaaagcgaat
atctacaaaggacgtattacccgtattgaaccaagcctagaagcggcatttgttgattac
ggcgcagaacgtcacggtttcctccctcttaaagaaattgcccgcgaatacttccctgaa
ggttatacataccaaggccgtcctagcattaaagaagtgctaagagaaggacaagaagta
atcgtacaagttgagaaagaagaacgtggtagcaaaggcgctgcactgacaactttcata
tctttggctggtagttacttagttcttatgcctaataaccctcgtgctggcggtatttct
cgtcgtatcgaaggtgatgaacgcactcaactgaaagcagcattaagcactcttgagctt
cctcaaggcatgggcttaatcgtgcgtacagcaggtgttggcaaaagtgcagaagagcta
gagtgggacttgaacgttctattgaatcactggggcgctattaagcaagcttctgattca
aatgcagctcctttccttattcaccaagaaagtaacgttatcgttcgtgcgattcgtgac
tatctacgtcgtgatattggcgagattctaatcgacagcaatactatttttgaacgtgca
caagcgcacattcaattaatacgcccagatttcatgaatcgcgttaagaaatacgatggt
gaagtgccactattcagccattaccagattgaaagccagatcgaatcagctttccaacgt
gaagttcgtcttccgtctggtggttctatcgtgatcgacccaacagaagctctaacttct
atcgatatcaactctgctcgtgcaacaaagggcagtgatattgaagaaacagcgctaaac
actaacctagaagcagccgatgaaattgcacgtcaattacgtctacgtgacctaggtggt
cttgttgttatcgacttcatcgatatgactccggttcgccaccaacgcgaagttgaaagc
cgtctacgtgatgccgttcgtttagatcgtgcacgtgttcagattggtcgtatttctcgc
tttggtcttctagagatgtctcgtcaacgtttgagcccatcactagcagaagcaagccac
cacatttgtcctcgttgtacaggtactggtgttgttcgtgataacgaatctctagcactt
tctgttctacgtttgattgaagaagaagctctgaaagacaacacagcacaagtacttgct
gttgtgcctgttccaatcgcctcttaccttctgaacgaaaaacgtcgctcagtaaaccac
atcgagaagaaccaagaagttaagatcactgttgttcctaactctgacatggaaacacca
cactttgaggttatccgtgttcgtgaaggtgaagagttcgatctactctcttacttgctg
cctaccaagctagaagctttaaaagaagcagaaagcaaagaaccagtagaacagactatt
cgtcctaagaagatcgaagagcctgctctgaaaggtttcgcggctccagctcaatcagca
cctactcctgcaccagctcctaaagctgttgaagagaagaaagttgaaccagctgcaacg
caagaacctagcctaattggtcgtttcttcaaagctatcggtagcttcttatttggctct
tcaactcaagaagagaaaaaagaagaagagaagcaagaagaaaaacctaagaacaatcgc
aacaacggtaaccgtcaacgccgtgatcgtaacgacaaccgccgtcgtaaccaacgtggt
gaccgtagcgaacaacgtaacgaacgtggtgaccgtagcgaacagcgtaacgaacgtggc
gacaatcgcaacgaaaaccgtgacaacaaacgccgtcgtaaacctgtacgtgatgagaaa
cctgaagagcaaaaagaagcagctccacagcaaactcgtcagcctcgtaagcctaagcaa
gatcgtcgcaataagccacgtgatgagcagaagcaacaggaagagcaagtaccatctaaa
ttagcagaagaaggtctacagctagcggcagaagctcaagctgataaaccagaagcgcca
aaggcgaagcctgaagcaaaagctgtgaaaattaaagagcgtcgtcaacgtcgtaagctg
aacaaactggttcgagttaaagaccagcaagctcaagcagaagctgacaacaatgccgat
aacgcttcaaaagagcaaaaggcacaaacagcaaatcacgaacaagctgtggctcaagag
caaaaagttgtggaacaagtagaagcaactcaagtaaatgctgagcaaacagaacaggaa
gagccgaagcaacgtcgtaaccgtcgttctccacgtcacctacgtgcaagtggtcaacgt
cgtcgtcgcggtcgtgatcgtcgccctaacccattccgcctacgtaaaggtggtgtagct
tctcctgagatggctatgggtaaagtgatgcctcgcttcattccaaaacctcaccacaat
cagacaaaacctgaagtggcggaaatggacgttgctgttgaagctcaagttgctactgaa
actcaagttgcggctcaagctccagagcaaaatacagctcaagagaatgcacctcaaagc
aacgtagtgatggctggcggttttgcttgtcctgaattagctatgggtaaagtaatcatc
tctcgtgaagacgcagttgttgctgaagaaacgcgctctgaagctcaggtaactgaagct
cctgtagtcgttgaagaagcaccagtgattgttgaaactgagaaagttgaagctccagtg
attgtagaagcgacgaaagtcgaagcggctgttgcagtagaagagacaacaccagttgtt
gaagctgaagcacctaaagctgaaagtgcaaaagttgaagaagcgcctgttgtaaaagca
gaagctcttcaagctgcaccaaaagcaacggttgctaagaagcaagcaggctcaccaatg
actaaagctcctggtccacaagagatcaaagagattgaagttgttgcagctccgttccgc
aatgagcgttttgtaccgaaaggtgcaggtagtcaggcagcgtcgaaccaagctggcgca
ggtatgactaagccaaactactaa
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