Vibrio splendidus: LTQ54_14180
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Entry
LTQ54_14180 CDS
T08240
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vsl
Vibrio splendidus
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsl03032
]
LTQ54_14180 (topA)
03400 DNA repair and recombination proteins [BR:
vsl03400
]
LTQ54_14180 (topA)
Enzymes [BR:
vsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LTQ54_14180 (topA)
DNA replication proteins [BR:
vsl03032
]
Prokaryotic type
DNA Topoisomerases
LTQ54_14180 (topA)
DNA repair and recombination proteins [BR:
vsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LTQ54_14180 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UOE84077
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Position
1:3089211..3091841
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGQKAAAVSTKGMSPED
KARIKKEKDRKALIKKMGINPYQEWEANYQILPGKEKVVAELQKLAENADHVYLATDLDR
EGEAIAWHLREIIGGDETRYKRVVFNEITKNAIQQAFETPGELNIDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREINAFIPEEFWDVHADTKTAEKTDL
RLQVAQKDGVAFKPDNEAQTQAAVSVLEKAQYEVCKREDRPTKSKPSAPYITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSSEAVEAAREYIGSEYGEQYLPPKALV
YGSKEGAQEAHEAIRPSSVDVKSEDLNGVDADAHKLYSLIWNQFVACQMTPAQYDSTTVS
VKADEYTLKAKGRILKFDGWTRVQRPMGKNEDTILPAVQVGEKLDLIALDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDGSFN
DLMNYDFTARMEQKLDQIAEGEASWKGVLDNFFEDFTGDLEKADLDEDAGGMKPNHIVET
DIECPTCSRKMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYVVEHGEFKVKGYDGPLVECDKCGS
DMVLKNGRFGKYMDCTSEDCKNTRKILRNGEVAPPKEDPVHFPELPCENSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVEELVRFKDRISPKFQYLTSAPVADPDGKPTVVRFSRKTK
ENYVRTEADGKPSGWTALYIDGKWEITDKRKKPKEK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttatagtggagtcgccagccaaggctaaaactatcaataaatat
cttggcaaagactttgtcgttaagtcgagtgtaggtcacgtacgtgatttaccaacggcg
ggtcaaagtactggtcaaaaggctgctgcagtttcaaccaagggtatgagcccagaagat
aaagctcgtatcaagaaagaaaaagatcgcaaagctctcattaaaaagatgggtatcaac
ccatatcaagagtgggaagcgaactaccaaattttacctggtaaagaaaaagttgttgct
gaattgcaaaaactggctgagaacgcagaccatgtttatctcgcaaccgatttggatcgc
gaaggagaagctatcgcatggcaccttcgtgagatcatcggtggtgatgaaacgcgatac
aagcgagtggtttttaacgaaattaccaaaaatgctatccaacaagcttttgaaactcca
ggtgagctaaacattgatggcgtaaacgcacaacaagcacgacgttttatggaccgtgtt
gttggctttatggtgtcaccactgctttggaagaaagtagcacgaggcctatccgctggc
cgtgttcaatcagtcgctgtaaaactactggttgagcgcgagcgcgagatcaacgctttt
atccccgaagagttctgggatgtgcatgctgataccaaaacagcagagaaaacagattta
agactgcaagtcgctcagaaagacggtgttgcgtttaaacctgataatgaagcgcaaaca
caagctgcagttagcgttttagaaaaagctcaatacgaagtatgtaaacgtgaagaccgc
ccaactaagagtaagccgtctgcaccttacatcacgtctacgctgcaacaagcggcgagt
acgcgtcttggttacggcgtgaagaaaaccatgatgttggctcaacgtttgtatgaagcg
ggttacatcacttatatgcgtactgactctaccaacttgagttcagaagctgttgaagcc
gctcgtgaatacattggttctgagtacggcgagcaatatcttccacctaaagcacttgta
tacggcagcaaggagggcgctcaagaggcccacgaagcgattcgtccttcaagtgtagat
gttaagtcggaagacttaaacggcgtagacgcagacgcacacaagctatattcactgatt
tggaatcaattcgttgcttgtcaaatgacacctgcgcaatacgattcaacgacagtaagc
gttaaagcggatgagtacacgctaaaagcgaaaggccgtattcttaagtttgacggttgg
actcgcgttcaacgtccaatgggcaaaaatgaagatactattcttcctgctgtacaggtt
ggtgaaaagctagacttaatcgcactcgaccctaaacagcacttcactaagccaccagca
cgtttcactgaagctgcgctagttaaagagcttgagaagcgcggtattggtcgtccttca
acttacgcatcaatcatctcgacgattcaagatcgcggttatgtaaaagttgaacagcgc
cgtttctatgctgagaagatgggtgaaattgttacagaccgtctagatggcagtttcaat
gatctaatgaactatgactttactgctcgtatggagcagaagttagaccaaattgcagaa
ggcgaagcaagctggaaaggcgtgctagataacttcttcgaagactttaccggcgatttg
gaaaaagcggatttagacgaagacgctggtggcatgaagccaaatcatatcgtagagacc
gatattgagtgtccaacttgtagccgtaaaatgggtattcgtacagcttcgacaggcgta
ttcctaggttgttctggttatgcacttccaccaaaagagcgttgtaagacaacaatcaac
cttggtgatgaagaaggtattatcaacgttcttgaagaagacgttgaaacagcagcactt
cgagcgaaaaagcgttgtcctatttgtgaaacggcaatggatgcttatctgattgatgat
aagcgtaagatgcacgtgtgtggtaacaaccctaactgtgaaggttacgtggttgaacac
ggtgaattcaaagtcaaaggctacgatggtccacttgttgagtgtgacaaatgtggttct
gacatggttctgaagaacggtcgtttcggtaaatacatggactgtacgagtgaagattgt
aagaacactcgtaagattctgagaaatggcgaagtagcgccacctaaagaagacccagtg
catttccctgaacttccatgtgaaaactcagatgcgtacttcgtacttcgtgacggtgct
tctggtctatttatggcagcgagcaactttcctaaatcacgtgaaacacgtgcgccatta
gtggaagagctggtacgttttaaagaccgtatttcacctaaattccaatacctgacatca
gcaccagttgctgatcctgatggcaagccgacagtcgttcgttttagtcgtaagacaaaa
gagaactacgttcgtactgaagcggatggtaaaccatctggttggactgcgttgtacatc
gatggtaagtgggaaattacggataaacgtaaaaagcctaaagagaagtaa
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