Vibrio splendidus: LTQ54_19065
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Entry
LTQ54_19065 CDS
T08240
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTQ54_19065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsl03019
]
LTQ54_19065
03009 Ribosome biogenesis [BR:
vsl03009
]
LTQ54_19065
Enzymes [BR:
vsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LTQ54_19065
Messenger RNA biogenesis [BR:
vsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LTQ54_19065
Ribosome biogenesis [BR:
vsl03009
]
Prokaryotic type
rRNA helicases
LTQ54_19065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UOE87305
LinkDB
All DBs
Position
2:663009..665114
Genome browser
AA seq
701 aa
AA seq
DB search
MESVSDWISIGIDRAPGTFCLLIYSGIPMSESVIQFNELALNDNILSALDSMGFVSPTPI
QAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHKPQAIIMAPTRELAIQVAA
EIKNLGRDINGLKVLEIYGGASIVDQMRALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHT
FVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPMVKTIVDRYLRNPARVDVAG
TNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVRTRQDTERLADWLSARGFKA
AALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVFNYDIPFDVESYIHR
IGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQLPQRDEVAAARVAKLGAELE
TEKESKALENFAGLISTLQESLEVDAATLAAMLLKRQQGKSPLFYVGEDPMIAAIERDKN
RRKDRREDRDNGRDGGGRNFNTQDWDTYQLQVGREQGVQVKDIVGALANELGLTKGSIGA
IKLDQGSTYVQLPKAMNSETTGKLSKLRIRQKEAGAVVVDFNDFREPRRGGGGRDGNRGG
RDGGRGGRDGGGYRGNREGGNREGGNREGGNGGRGGYRGNRDGSPAGGRDGNSAGGRDGE
RRFDRNRGGDHRGNHRGERGHGSAAAGNGGNRGRRPERSEG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagtatctgattggatcagtattggaattgatagagctcccgggaccttttgt
ttacttatatatagtgggatcccaatgtccgaatctgtaattcaatttaatgaattagcc
cttaacgataacattctttcagctcttgatagcatgggtttcgtttctccgactccaatc
caagcagcagctattcctcttcttcttgaaggccgtgacgcactaggtaaagcacagact
ggtactggtaaaacagcagcattctctctgcctttacttaacaaaatcaacctgaaccaa
cacaaaccacaagcaatcatcatggctcctactcgtgagctagcgattcaagttgctgcg
gaaatcaaaaacttaggtcgtgacatcaacggtcttaaagttcttgaaatctatggtggt
gcttcaattgttgatcaaatgcgtgctctaagccgcggtgctcacattgttgttggtact
ccaggtcgtgttaaagacttactaactcgtgaccgtctacacctagatgaagcacataca
tttgttcttgatgaagcagatgaaatgctaaaaatgggtttcgtagatgacgttacttgg
atccttgagcaagctccagaatctgcacaacgtgtacttttctctgcaactatgcctcca
atggttaagactattgttgaccgttacctacgtaaccctgcacgagttgacgttgctggt
actaaccacacagttgacaaagtagcgcagaattactgggttgttaaaggcgtagaaaaa
gacgaagcaatgtctcgtcttctagaaactgaagaaactgacgcgtcaatcgtattcgta
cgtactcgtcaagacactgagcgtctagctgattggctatctgcacgtggcttcaaagct
gctgcattgcacggtgatattcctcagtctctacgtgagcgcactgttgatcacatcaaa
caaggtgttatcgatatcctagttgcaactgacgttgtagcacgtggtcttgatgttcca
cgtatcactcacgtatttaactacgacatcccattcgatgttgaatcttacatccaccgt
attggtcgtacaggccgtgctggacgtaaaggtaaagcgatcctactagttcgcactaac
caaatccgtatgcttcgcacaatcgagcgtgtaactaagtctcaaatggaagaaatccaa
cttccacaacgtgacgaagttgctgctgcacgtgttgctaagcttggtgctgagcttgaa
actgagaaagagagcaaagctctagaaaacttcgcaggtttaatctcgacactacaagaa
tctctagaagttgatgctgctactctagctgcaatgcttcttaagcgtcagcaaggtaag
agcccactattctacgttggcgaagacccaatgatcgctgctattgagcgtgataagaac
cgtcgtaaagatcgtcgtgaagatcgtgacaatggccgtgacggtggtggtcgtaacttc
aatacgcaagattgggatacttaccaactacaagttggccgtgagcaaggtgttcaggtt
aaagatatcgttggcgcactagcaaacgaacttggcctaactaaaggttctatcggtgct
atcaagctagaccaaggttctacttacgttcagcttccaaaagcaatgaactctgaaact
actggtaagttaagcaaacttcgcattcgtcaaaaagaagctggcgctgtagttgttgat
ttcaacgacttccgtgagcctcgtcgtggcggcggcggtcgtgatggcaaccgtggcggt
cgtgatggcggtcgtggcggtcgtgatggcggcggctatcgtggtaaccgtgaaggcggt
aatcgcgaaggtggtaaccgtgaaggtggcaatggcggtcgtggtggctaccgtggcaac
cgtgatggtagcccagctggcggtcgtgatggtaactctgctggtggtcgtgatggcgaa
cgtcgctttgaccgtaaccgtggtggtgatcaccgtggtaaccaccgtggcgaacgtggc
catggcagcgcagcagcaggcaatggcggcaaccgcggtcgtcgtccagagcgcagcgaa
ggttaa
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