Vibrio splendidus: LTQ54_22885
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Entry
LTQ54_22885 CDS
T08240
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsl
Vibrio splendidus
Pathway
vsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTQ54_22885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsl03019
]
LTQ54_22885
Enzymes [BR:
vsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LTQ54_22885
Messenger RNA biogenesis [BR:
vsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LTQ54_22885
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UOE86539
LinkDB
All DBs
Position
2:complement(1586856..1588439)
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AA seq
527 aa
AA seq
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MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL
EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL
RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ
NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLIKD
NDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVAT
DIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER
LIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKN
KRHVSGSGSAPKRKPNANKPNSGNKASDNNSTVAGDDKSLRNNGSNYKRGNAANKPSTNS
SGKPAGAGKPKKSGFGGGNGSSKPAGNKPTGNKPSPSRSRSKPAPQK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggcctttctgaaccgatccttaaagctattgaagcacaaggt
tacgataagccatcaccaatacaagagaaagccgtaccagctgtcctaacgggcaaagat
gttatggccgctgctcaaacaggtacaggtaaaactgcaggcttcacgctacctattctt
gaaatgttgtcaaaaggccctcgcgtacgtcagaaccaagtacgtgcgctagtgctaaca
ccaacccgtgagcttgctgcgcaagtgaatggcagcgtagtgaagtacggtattaactta
cctcttacttctacggtggtgtttggtggtgtgaaaattaaccctcagatgcaaaaactg
cgtaaaggtagtgatgtactggtagcaacaccgggtcgtctacttgacctatacaaccaa
aatgctgtgcgttttgatcaactagaaattttagtgctagatgaagctgaccgcatgcta
gacatgggcttcattcgcgatatccgtaagatcttggcttttctacctaagaagcgccag
aacctactgttctcagcgacgttctctgatgatattcgtggcttggcgaaaggtttagtc
aacaatcctgttgaaatctcggtaagccctgcaaactcaacggcaccaactgttgagcaa
agcatctacccagtagataaaaagaaaaaaagcgcaatgctagcgaagctcatcaaagat
aatgattggcgacaagtgcttgtgtttagcaaaacgaaacatggcgcaaacaagctttca
cacttccttgacgagcaaggcatctcagcggcgcctattcatggtaacaagagccaaggc
gcgcgtactaaagccctagagaacttcaaaacgggtaaggtgcgagtattggtggcgact
gatatcgcagcgcgtggtatcgatattccgcaactgcctcaagtagtgaatttcgacctt
ccaaacgtatcagaagattacgttcaccgtattggtcgtactggccgtgctggtgaagtg
ggtaaagcaatttcattggtttgtgctgatgaagtgggtgaactgtttggtatcgagcgc
cttattcagcaagtgcttgagcgccgtgaacttgaaggttttgcacctgtaaacaagttg
ccagaatctcgtttggattcgcgtccgattaagcctaagaagccgaaaaagacacgtgaa
cactctgatggtcaacgttctggcgagaatgctcgcgggcacaaaccagcaggtaagaac
aagcgtcatgtttctggttcaggttccgctcctaagcgtaagcctaatgcgaacaagccg
aactcaggcaacaaagcttctgacaacaactcaacagttgcgggtgatgataaatcttta
agaaataatggcagtaactataagcgtggtaatgcggcaaacaagccttctacgaatagt
tctggtaagcctgctggtgcaggtaaacctaagaagtctggtttcggtggcggtaatggc
tcgagcaaaccagcaggtaataagcctacaggtaacaagccttcaccatctagaagccgt
tctaagcctgcacctcagaaatag
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