Vulcanisaeta souniana: Vsou_12180
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Entry
Vsou_12180 CDS
T08588
Name
(GenBank) exosome complex exonuclease
KO
K12589
exosome complex component RRP42
Organism
vso
Vulcanisaeta souniana
Pathway
vso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vsou_12180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vso03019
]
Vsou_12180
Messenger RNA biogenesis [BR:
vso03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Vsou_12180
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Vsou_12180
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BDR92125
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Position
1127985..1128836
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AA seq
283 aa
AA seq
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MLSVTQEKGVVPKLKQEVMKKMIEQGVRIDNRGLNDYRALSIRVGVVKTADGSSLVSLGN
TKVMAGVKVEIGKPFEDTPDEGALIVNLEIAPTASPDVEPGPPDENAIEVARVVDRAIRH
SGFLNFKSLSIVTGKHAWFLWVDVYVLNHDGNLVDASTIAAVTALMNTALPKVELDPAGN
ILRIDRGSRSPLSLNMDKLPLTITHVKIGNFLLVDPIREEEDLSDGAYITGVAGGSIVSI
QKVTGAFTKDEVNYMVSNSINQYVKLRESVINIMKNPPTDLQL
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgctaagtgtaactcaggagaagggcgttgttccaaagcttaagcaggaggttatgaag
aagatgatcgagcaaggcgttaggatcgataataggggcctgaatgattatagggcattg
agtattagggttggggttgtgaagactgctgacgggagttcactggtatccctcggtaat
accaaggtaatggcgggtgtcaaggttgagatcggaaagccctttgaggacacgcctgat
gagggcgcattaatcgtaaacctggagatcgcgcctacggcgtccccagacgtagagcct
gggccacctgatgagaatgcaattgaggttgccagggtggtggatagggcgataaggcac
agtggcttcctgaacttcaagtctctatcaatagtcactggcaagcatgcctggtttctc
tgggttgatgtttatgtgcttaaccacgatggtaatctcgtggacgcatcaacaatagcc
gcagtaaccgcattaatgaacacggcattgcctaaggttgaactcgacccagcaggtaat
atactaagaatagataggggtagtagatcaccgctgtcactgaacatggataaattacca
ctaacaataacccatgttaagattggtaatttcctccttgtggatcccatacgtgaggag
gaggacctatctgatggcgcctacataactggcgtggctggcggtagtattgtgtcgata
caaaaggtgacaggcgcctttactaaggacgaagtgaattacatggtgagtaattccatt
aatcaatacgtaaaactcagggaatccgtaataaatatcatgaagaacccaccgacggac
cttcaactctaa
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