Vibrio atlanticus: VS_0108
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Entry
VS_0108 CDS
T00812
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03030
DNA replication
vsp03410
Base excision repair
vsp03420
Nucleotide excision repair
vsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VS_0108
03410 Base excision repair
VS_0108
03420 Nucleotide excision repair
VS_0108
03440 Homologous recombination
VS_0108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsp03032
]
VS_0108
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_0108
Enzymes [BR:
vsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VS_0108
DNA replication proteins [BR:
vsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VS_0108
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VS_0108
NER (nucleotide excision repair)
GGR (global genome repair) factors
VS_0108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
CAV17142
UniProt:
B7VHD0
LinkDB
All DBs
Position
1:98803..101604
Genome browser
AA seq
933 aa
AA seq
DB search
MARIPDNPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAV
IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT
LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK
ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELLEGGSGVVE
ADEKSSAAGAGSVRSSASTVEMNTSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDT
ETDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQLKPILEDDAQAK
VGQNLKYDMSVLARYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQI
AGKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYGEIEVPLIPV
MSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGL
PVIKKTPSGAPSTNEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVH
TSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAH
LSGDKALLEAFQQGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQ
LGIPRGEAQHYMDTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRR
KAAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAE
IESKVQELMESAAELEVPLVAEAGHGDNWDQAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtattcctgataatccattgattctgatcgatggctcttcttacctatatcgc
gcgttccatgcttaccctggcaccatgagcaatggtgatatcccaacgaacgctgtttat
ggtgtagttaacatgctacgcagcatgatgcgtcaatttgcttctgatcgtattgcggtt
atttttgatgcgaaagggaaaacgttccgtgatgacatgtacccagagtacaaagcaaac
cgcccacctatgcctgacgatcttcgttgccagatagaaccattgcacaatgtgattcgt
gcgatgggtttgccacttatctctattcctggcgttgaagcagatgacgtgattggtacg
cttgcttctcaagcttctgcgatggggatgcctgtacttatcagtactggtgataaagat
atggcgcagttagttgatgacaacgttactctgatcaacaccatgaccaacgtggtaatg
gatcgcgaaggtgtgattgagaagtttggtatcccaccagaactgatcatcgattacttg
gcactgatgggcgataaagtcgataacatccctggtgttccgggtgtgggtgacaagaca
gcgacggctttactacaaggcattggtagtatcgaaaagttgtatcagaatcttgatgat
attgcggcgcttggtttccgcggttcgaagacgatggctaagaagctggctgataataaa
gccaatgctgacatgtcctacgagcttgcaacaatcaagctagatgttgagcttgaagag
acaccagaatcattggtaaaagctcaacccaatatcgatgagttgatcaagctatacggt
caattggttttcaaatcttggctgaacgagctccttgaaggtggcagcggagtggttgag
gcggatgagaaatcttccgcagcgggagctggatcagtacgtagcagcgcttctactgta
gagatgaatacgtctgccgtgacgattgatcgtagcaactacgaaacgattctagatgaa
gcgtcattcaatgtttggttagaaaagcttaaagcagctgaattgtttgcttttgatact
gagacagacagccttgattacatggtcgcgaatctagtcggtttatcatttgcgacggaa
gagggcgttgccgcttacgtaccagttgctcatgattacctagatgcaccgcaacagctg
gatcgtgattgggtacttgaacaacttaaaccgattcttgaagatgatgctcaagctaaa
gtgggtcaaaacctgaagtacgatatgagtgtgctagcgcgctacggtatcgaaatgaag
ggtattaaacatgacaccatgttggcgtcttacgttttcaatagcgtaggtggcaagcat
gacatggacagcctagcgttgcgtttccttcagcacagctgcatctcatttgagcaaatc
gcaggtaaaggcaagaaacagcttactttcaaccagattgaactgggtgaggcgtctcca
tacgctgcagaagatgctgacgtgacactacgtttgcataaccgcctgatggaaaacatc
gagcaagatgaaaagcttaaaaccatctatggagaaatcgaagtaccgttgatccctgtg
atgtctcgcattgaacgcactggtgtattcattgatgacatgttgctaggcgctcaatca
caagagattgcggttcgtctggatgagctagagcagaaagcttacgagatagcagagcaa
gagttcaatatgaactcgccaaaacaactgcaagcgatcctgtttgagaaaatgggtctg
ccagttatcaagaaaacgccatcaggtgcaccttcaaccaacgaagaagtgcttcaagag
ctggcgcttgattacccgctacctaagttgatcattgagtatcgtggtcttgcgaagctt
aagtcgacgtacacagataaactgccgaagatgatcaacgctgagactggtcgtgttcat
acgtcttatcatcaagcggtgaccgcgacgggccgtttgtcttcgactgatccaaaccta
cagaacatcccaattcgtaatgaagaaggtcgtcgtatccgccaagcattcgttgcacaa
catggttggaagattctagcggtcgattactctcaaattgaattgcgtatcatggcgcac
ctatcaggtgacaaagcgctgctggaagcattccaacaaggcaaagatatccacgcggca
acggctgctgagatcattggtgttgatattgagagtgtgaccactgagcagcgtcgtcgt
gctaaagcggttaactttggtcttatctacggcatgagtgcttttggtttggctaagcag
ctaggtattcctcgtggcgaagcacaacactacatggatacttactttgagcgctaccca
ggtgtgatgcagtatatggaagacacacgcagcgcggcttcagagcaaggcttcgttgaa
accatttacggtcgtcgtctgcaccttcctgagattcaatctcgaaatggcatgcgtcgt
aaggctgctgaacgtgcggcgatcaacgcgccaatgcaaggtacagcggcagacatcatt
aagaaagcgatgctattggttgatgagtggattcaagcggaaggcgatggtcgtgtgaaa
ctgcttatgcaagtacacgatgaattggtcttcgaagtagaagagtcagctttagccgaa
attgaaagtaaagtacaagaattgatggaatctgctgcagagctagaagtaccgcttgtc
gcggaagctggccacggtgacaactgggatcaagcccactaa
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