Vibrio atlanticus: VS_0239
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Entry
VS_0239 CDS
T00812
Name
(GenBank) 60 kDa chaperonin (Protein Cpn60) (groEL protein)
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS_0239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsp03019
]
VS_0239
03110 Chaperones and folding catalysts [BR:
vsp03110
]
VS_0239
03029 Mitochondrial biogenesis [BR:
vsp03029
]
VS_0239
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vsp04147
]
VS_0239
Enzymes [BR:
vsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VS_0239
Messenger RNA biogenesis [BR:
vsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VS_0239
Chaperones and folding catalysts [BR:
vsp03110
]
Heat shock proteins
HSP60 / Chaperonin
VS_0239
Mitochondrial biogenesis [BR:
vsp03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VS_0239
Exosome [BR:
vsp04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VS_0239
Exosomal proteins of other body fluids (saliva and urine)
VS_0239
Exosomal proteins of breast cancer cells
VS_0239
Exosomal proteins of colorectal cancer cells
VS_0239
Exosomal proteins of bladder cancer cells
VS_0239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
CAV17270
UniProt:
B7VHQ8
LinkDB
All DBs
Position
1:234837..236483
Genome browser
AA seq
548 aa
AA seq
DB search
MAAKDVKFGNDARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI
ELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQSIIAEGLKAVAAGMNPMDLKRGI
DKAVIAAVEELKNLSVPCSDTKAIAQVGTISANSDSTVGNIIAEAMEKVGRDGVITVEEG
QALQDELDVVEGMQFDRGYLSPYFINNQEAGSVDLDSPFILLIDKKVSNIRELLPTLEAV
AKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKSMLQDIAILTGGTV
ISEEIGLDLEKVTLEDLGQAKRITITKENSTIIDGAGNEDMIKGRVSQIRQQIEDATSDY
DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALI
RAASKVAGLEGDNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVRAGEGNYGYNA
ATGEYGDMIAMGILDPTKVTRSALQFAASVAGLMITTEAMITDKPQDSGPAMPDMGGMGG
MGGMGGMM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagacgttaaatttggtaacgacgcacgtattaaaatgctagaaggtgta
aacgttctggctgacgcagtaaaagtaacgctaggtcctaaaggccgtaacgttgttcta
gacaaatcatttggcgcaccaacgatcactaaagatggtgtttcagttgcacgtgaaatc
gaacttgaagacaagtttcaaaacatgggcgcacaaatggttaaagaagtggcttcgcaa
gcgaatgacgcggcgggcgacggaacaacgacagcaacagtattggctcagtctattatc
gctgaaggcctaaaagccgttgctgctggcatgaacccaatggaccttaagcgcggtatc
gacaaagcggttatcgcggctgttgaagagctgaagaacctttctgttccttgttcagac
acgaaagctatcgcgcaagtaggtactatctctgcgaactctgattcgacagtaggtaac
atcattgctgaagcgatggaaaaagtaggtcgtgatggcgtcatcacggttgaagaaggt
caggctctgcaagacgagctagacgtagttgaaggtatgcagttcgaccgcggttacctg
tctccttacttcatcaacaaccaagaagcaggttctgttgatctagatagcccgttcatt
cttcttatcgacaagaaagtgtctaacatccgtgaacttcttccgactctagaagcggtt
gctaaggcatctcgtccacttcttatcatcgctgaagatgtcgaaggcgaagcgctagca
actcttgttgtgaacaacatgcgtggcatcgttaaagtggctgcggttaaagcacctggt
ttcggcgaccgtcgtaaatctatgctgcaagacatcgctatcctaacaggcggcacggtt
atctctgaagagatcggcctagaccttgaaaaagtaacgctagaagacctaggtcaagct
aagcgcattacgatcactaaagaaaactcaaccatcatcgatggtgcgggtaatgaagat
atgatcaaaggtcgcgtttctcaaattcgtcaacaaatcgaagatgcaacgtctgactac
gataaagaaaaacttcaagagcgcgtagctaagctagctggcggtgttgcagtaatcaaa
gtaggcgctgcaactgaagttgagatgaaagagaagaaagaccgcgtagaagatgcactt
cacgcaactcgcgctgctgttgaagaaggtgtggttgctggtggtggtgttgcacttatc
cgcgctgcatctaaagttgctggccttgaaggcgacaacgaagagcaaaacgtaggtatc
cgtgttgcactacgtgcaatggaagcgcctattcgtcaaatcactaagaacgcaggtgat
gaagagtctgttgttgctaacaatgttcgtgctggcgaaggtaactacggttacaacgcg
gctactggcgaatacggcgacatgattgcaatgggtatcctagatccaactaaggtaact
cgttctgcacttcagttcgccgcatccgttgcgggtcttatgatcacaacagaagcgatg
atcacagacaaacctcaagattctggccctgcaatgcctgatatgggtggcatgggcggt
atgggtggcatgggcggcatgatgtaa
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