Vibrio atlanticus: VS_0320
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Entry
VS_0320 CDS
T00812
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
vsp
Vibrio atlanticus
Pathway
vsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VS_0320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_0320
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VS_0320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VS_0320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
AAA_23
nSTAND1
DnaJ_CXXCXGXG
NACHT
AAA_21
Viral_helicase1
AAA_25
zf_C2H2_10
Motif
Other DBs
NCBI-ProteinID:
CAV17329
UniProt:
B7VI92
LinkDB
All DBs
Position
1:complement(311476..314307)
Genome browser
AA seq
943 aa
AA seq
DB search
MDKIEIRGARTHNLKDINLTIPRDKLTVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRC
PDHNTPLAAQTISQMVDKVLELPAGSKMMLLAPIVKERKGEHVKTLENLAAQGFIRARID
GETCDLSDPPTLELHKKHTIEVVVDRFKVRPDLQQRLAESFETTLELSGGIAVVGWMDDK
EQEEIVFSANFACPKCGYSMQELEPRLFSFNNPAGACGTCDGLGVQQYFDPSRVILDESL
SIAEGAIKGWDQKNYYYFQMLTSLSDHYGFDLYAPFNSLPKKTQEIILKGSGRTEVEFKY
INDRGDIRVKRHPFEGILNTLERRYRDTESSAVREDLAKYISTKSCSSCDGTRLRLEARN
VFIGDTTLPEIVQLSIADALEFFQNLSLSGQRGQIADKVMKEINDRLHFLVNVGLNYLNL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLVHLRDLGNT
VLVVEHDEDAIRCADHVIDIGPGAGVHGGHVVAEGTMQDIIENPNSLTGQYLSGAKEIAV
PKQRTPINKKKVVEIVGATGNNLKNVTATIPVGLFSCITGVSGSGKSTLINDTFFKVAHT
QLNGATTAVPAQHKKIKGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE
SRSRGYKPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY
KGKTIDEVLEMTVEDAREYFNPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKL
ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLTVLHRLRDHGNTVVVIEHNLDVVKTADW
ILDLGPEGGQGGGEIVAEGTPEDVALVEGSHTARFLKPMLNLK
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatagaaattagaggcgctcgtacgcataacctcaaagacattaacctaacc
atacctcgtgataagctaacggttatcactggattatcaggttcaggaaagtcgtcactt
gcatttgataccctctacgcagaaggtcaacgtcgttatgttgagtctttgtcggcctat
gctcgtcaatttctatctctcatggaaaaacccgatgtcgaccacatcgaaggtttatct
ccagccatctccatcgaacagaaatcgacctctcataaccctcgttcaactgtgggtacc
atcactgaagtctatgattacctaagactactttatgctcgtgtcggtgaaccgcgctgt
cctgatcacaatacccctcttgcagcacaaaccatcagtcaaatggtcgataaagtctta
gaactgcctgctggttcaaagatgatgctgctggctccgatagtcaaagaacgtaaaggt
gagcacgttaaaacgcttgagaatctagcggctcaaggctttatccgtgcccgtattgat
ggcgaaacctgtgatctgtccgatcctccaacattggaactgcacaagaagcacaccatt
gaagtagtggtagacagattcaaggttcgcccagatcttcaacaacgtttagcagaatcg
ttcgagacgacattagagctatctggtggtatcgcagttgtcggttggatggatgataaa
gaacaagaagagatcgtgttctcagctaattttgcttgtccaaaatgtggttacagcatg
caagagcttgagcctcgcctattctcatttaataacccggcaggtgcctgtggtacgtgt
gatggtcttggtgttcaacaatactttgatccaagcagagtaattttagatgagagccta
agtattgcagaaggtgcgattaaaggctgggatcagaaaaattattactatttccaaatg
ctgacatcgctgtcagaccattatggttttgatctgtatgcgccatttaattctctaccg
aaaaagactcaagagatcattcttaaaggttcaggtcgtactgaagtagaattcaaatac
atcaatgatcgtggtgatatcagagtaaaacgccacccctttgaaggtattttaaatacg
ttagaacgccgttaccgcgataccgaatctagcgctgtgcgtgaagatcttgccaagtac
atatcaacgaaatcatgctctagctgtgatggcactcgtttaagactagaagctcgaaat
gtcttcattggcgataccacactgccagaaatcgttcagctcagcattgctgatgcacta
gaatttttccaaaacttgtcgctaagcggccagcgtgggcaaattgcagataaagtgatg
aaagagatcaatgatcgtctgcacttcttggtgaacgttggtttgaattacctaaaccta
tcacgcagtgcagaaacattgtctggtggtgaagcgcaaaggattcgtctcgcaagtcaa
attggtgccggcttagttggcgttatgtatgtgctggatgagccatcgattggcctccac
cagcgtgataatgaacgtctactgcaaactctggttcacctaagagatttaggaaatacc
gtacttgttgttgagcatgacgaagatgcgattcgttgcgctgaccatgttatcgatatc
ggcccaggcgcaggggtacatggtggccacgtagtcgccgaaggtaccatgcaagacatc
atcgaaaatccgaactctttaacagggcaatacctgagcggcgccaaagaaattgcggta
ccaaaacaaagaacgcctatcaacaagaaaaaggtcgtcgaaatcgttggcgcgactggg
aacaacctaaagaatgtcactgcgacaatccctgtaggcttgttcagctgtattaccggt
gtatcgggatccggtaaatcaacactcatcaatgacaccttctttaaagtcgcccacact
caattgaacggtgcaacaactgcagttccggcgcagcacaaaaagattaaaggcttagag
catttcgacaaagtaatcgatattgatcaaagccctatcggtcgaacaccaagatcgaat
cctgcaacctacactggtattttcactccaattcgagagttatttgcaggtacacaagaa
tcacgatctcgtggctacaagccaggtcgattcagttttaacgttcgtggtggtcgttgt
gaagcgtgtcagggagacggtgtcatcaaagtagagatgcacttcttgccagatgtgtat
gtgccgtgtgatgtgtgtaaaggtaagcgttataaccgtgaaactttagaagttcgctac
aaaggcaaaaccattgacgaagttctagagatgactgtcgaagatgctcgagaatacttc
aaccctgttcctgttattgctcgtaagctgcaaaccttaatggatgttggcctttcctac
attcgcctcggacaagcagcgacaaccttatctggtggtgaagcccaacgtgttaaattg
gcacgtgagctgtcgaaacgagatacaggtaaaaccttatacattctcgacgagccaaca
acagggcttcacttccacgatattcaacagctattaacggtattacatagattacgtgat
cacggcaatacagttgtcgtgattgagcataacctagacgtcgtcaaaaccgcggactgg
atcctagatcttggccctgaaggtggtcaaggaggcggtgaaattgttgcagaaggtact
cctgaagatgtggcgttagtcgaaggttcgcatacggctcgcttccttaaacctatgtta
aatttgaagtag
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integrated database retrieval system
