Vibrio atlanticus: VS_0397
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Entry
VS_0397 CDS
T00812
Name
(GenBank) RNA polymerase sigma factor rpoD (Sigma-70)
KO
K03086
RNA polymerase primary sigma factor
Organism
vsp
Vibrio atlanticus
Pathway
vsp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VS_0397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsp03021
]
VS_0397
Transcription machinery [BR:
vsp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VS_0397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
CAV17405
UniProt:
B7VIG8
LinkDB
All DBs
Position
1:complement(402827..404671)
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AA seq
614 aa
AA seq
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MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALNDDDANIDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINTVQLSVAEYPGTIPYILEQFDRVLAEEIRLTDLINGFVDPDDDGTAAPTA
THIGSELAKTDLEDEDKEEAEDDEEEEEEDTGIDPELALEKFTALRTSYQNRQLAINEYG
HESPKATLATTMMQDVFKEFRLTPKQFDYLVNELRTSMDRVRTQERLIMRQTVEYGKMPK
KSFIALFTGNESSEAWLDEVLASDKPYAEKIKRNEHDIRRSIQKLDIIERETSLTVQSIK
DISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPL
PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS
LRGATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSETLRSFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagcttaaattacttgttattaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaacgaccacctacctgcagaaatcgtggattctgaacag
gtagaagacatcattcaaatgatcaacgacatgggtatcaaggtagtagaaactgcacct
gacgctgatgatctagcacttaatgatgacgatgccaatatagatgaagatgcagctgaa
gctgctgctgctgcgctttcaagcgtagaaagcgagattggccgtacaactgacccagtt
cgtatgtacatgcgtgaaatgggtacagttgaactactgactcgtgaaggcgaaatcgac
attgcgaagcgtattgaagatggtatcaatactgttcaattatctgtagctgagtaccca
ggcactattccatacatcttggaacagtttgaccgcgtactcgctgaagagattcgttta
acagatctaatcaatggctttgttgacccagacgacgatggcacagctgcgccaacggcg
actcacatcggttcagaacttgctaaaactgatctagaagacgaagacaaagaagaagca
gaagacgacgaggaagaagaagaggaagatacaggtattgatcctgagcttgctcttgag
aagttcacagcacttcgtactagctaccaaaaccgtcaactcgcaatcaatgaatacggt
catgaaagcccgaaagcaacacttgcaacgacaatgatgcaagacgtattcaaagagttc
cgtctaacgccaaaacagttcgattacctagtaaacgaactgcgtacttcaatggatcgc
gtacgtactcaagaacgcctaatcatgcgtcaaacggttgagtacggcaaaatgccgaag
aaatctttcattgctctatttactggtaatgaatctagcgaagcatggttggacgaagtt
cttgcttcagacaaaccatacgctgaaaagatcaaacgtaacgaacacgacatccgtcgt
tctatccaaaagctggatataatcgaacgtgaaacgtctcttactgttcaaagcattaaa
gatatcagccgtcgtatgtctatcggtgaagcgaaagctcgtcgtgctaagaaagagatg
gttgaagcgaacttacgtctagtaatctcgattgctaagaagtacacaaaccgtggtcta
caattcctggatctaatccaagaaggtaacatcggtctgatgaaagcagtagataagttt
gaataccgtcgtggttacaagttctctacttacgctacgtggtggatccgtcaagcaatc
actcgttcgattgccgaccaagctcgtactatccgtattccggttcacatgatcgaaacg
atcaacaaactaaaccgtatctctcgtcaaatgctacaagagatgggtcgtgaaccactt
ccggaagagttggctgagcgcatgcaaatgcctgaagacaagatccgtaaagtactgaaa
atcgctaaagagcctatctcaatggagacaccaatcggtgacgacgaagattcgcatcta
ggtgatttcatcgaggatacaacgctagaattgcctttagactctgcaacggcaacaagc
ctacgcggcgcaactaaagacgttcttgcaggcctaacgcctcgtgaagcgaaagtactg
cgtatgcgtttcggtatcgatatgaacactgaccacactcttgaagaggttggtaagcag
ttcgacgtaactcgtgaacgtatccgtcagatcgaagcaaaagcactgcgtaaacttcgt
cacccaagccgctcagaaactctgcgtagcttcctagacgagtaa
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