Vibrio atlanticus: VS_0675
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Entry
VS_0675 CDS
T00812
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vsp
Vibrio atlanticus
Pathway
vsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VS_0675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsp03400
]
VS_0675
Enzymes [BR:
vsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VS_0675
DNA repair and recombination proteins [BR:
vsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VS_0675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_25
AAA_11
AAA_12
KaiA_N
ResIII
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
CAV17669
UniProt:
B7VJZ3
LinkDB
All DBs
Position
1:705822..709496
Genome browser
AA seq
1224 aa
AA seq
DB search
MTTTSSVQVIAPQTLDTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDL
TEATRHHEPLTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGQSDDPVIAPLLQAI
DDHAGAAKTLLNAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFDNEFVTDESHLKAQVV
ADYWRKQFYPLPIQLAGEVRNIWGSPASLLADVNRYLTGSPLKLTVEAMSDDLQTLHNQN
LDKVKQLKALWCESEADFLALISGSDVNKRSYTKKSLPTWLEAVTAWAQSDTNDYQFPDK
LEKFSQATLIEKTPKGTAPQHAVFEAIEDFLSSPADLKAPLLAHAITHCRTMLAKAKQQK
QWLSFDDLLTQLSASIDVDEQSLLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPQ
CGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGINWRSSADMVSAVNQVFMNSDS
PFIYDQDIPFLPVAASPSADKRQWVMNGQTQHALTFWLQDAEDKPLPKGEYHKAMAEATA
SQIQTILTASQNERAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKNALSEQGIASVYLSN
RDSVFTSLVAQDIQRLLQGVLTPENDRALRASLASELFALDAASLDELNNDEVVWENVVN
EFREYRKLWLQRGVLPMLRSVISKRHLAERLLEEENGERSLTDLMHIGELLQQARQELDS
DYGLLRWLAEAISDAQNGLGGSEDDIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVASY
REASEGKFYDHESDTTVLDITGSDSALAQADKERLAEDLRLIYVALTRAVYGCFIGMAPL
RKGRSTKEPTGVHLSAMGYLVQNGQEQGIAELHQALSAIEGKNSSVLLSGTPTAHEHVFV
QTEQVSEDLHANELKASIDRAWRITSYSGLVKQGSHGASHDATIEVSGFDIDSADEQDES
ELIEPERSIFTFPRGARPGTFLHTLFEDVEFTEPATSEHNTQVITHLLECEQYELEWLPV
LQQLVDTVLNTALDGKSLKLSDKDSTQRLVEMEFLLPIEVLAASELNQTIQYHDPLSAKA
GDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQ
YQIYALALHRFLRSRVADYSYDQHFGGVYYLFLRGMDGQSQQGIFSAKPTLALLDEMDQL
IDGKVIDRRSAQLNDNETGQMGLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacaagcagtgttcaggtaatcgctccacagacactcgataccatgacgttt
ccacttcatggcgcgcgtttaattgaagcgtcagcgggtacgggtaaaacatttaccatc
gctggcttgtacttgcgcctactgctcgggcacggcacggccgctccacaaggtgatctg
actgaagccactcgacaccatgagccgctaaccgtagaccaaatcttggttgtgaccttt
actgaagcggcaacggcagagctacgagatcgtatccgtgctcgaatccatgatgcacgt
atcgcgtttgcacgtgggcaaagtgacgacccagtgattgcgcctttgttacaagccatt
gatgatcatgctggtgctgcgaaaaccttactcaatgccgaaagacaaatggatgaggcg
gcggtatacaccattcacggcttctgtcagcgtatgctgactcaaaatgcctttgagtct
ggaagccgttttgataatgaatttgtgaccgatgaaagtcacctgaaagcgcaagtggta
gctgactattggcgtaagcagttttacccgctgccaattcaactggcgggtgaagtgcga
aatatttggggctctcccgcttcgttattggctgacgtaaatcgctacctgacgggttct
ccactaaagctaactgtggaagcaatgtcggatgacttgcaaactctgcacaatcaaaac
ctagataaagtgaagcaacttaaagcgttgtggtgtgaatctgaagcggactttttggct
ttgatttcaggttcagatgtgaacaagcgcagctacactaagaagtctttgcctacttgg
ttagaagcggtaacagcatgggcgcagagcgacaccaatgattaccagttcccagataaa
ttggagaagttctcacaagccactctaattgaaaaaacaccgaaaggcacggcacctcag
cacgccgttttcgaagcgattgaggacttcttaagttctcctgcagacctgaaagcccct
ttgttggcacatgcgattactcattgtcgaaccatgttagctaaggctaaacagcagaaa
cagtggttatcgtttgatgatttgctaactcagttatccgcgtccattgatgtggatgag
caatcactgctggtggagagaattcgaaccttatacccagtggcgatgatcgatgaattc
caagataccgatccgctgcaatacagcatttttagccgaatctatttagataacccgcaa
tgtggtctgtttatgatcggtgacccgaagcaggctatttacggcttccgtggcgcggat
atctttacctacattaaggcaagaaaccaagttagtgctcactatacgttaggcattaac
tggcgttcgagtgctgatatggtgagtgcagtaaaccaagtgtttatgaattcggatagc
ccgtttatctacgatcaagacattccatttttgcccgtagcagcgagcccatcggctgac
aaacgccaatgggtgatgaatggtcaaactcagcacgcgctcaccttttggctgcaggat
gcagaagataagcccttaccgaaaggcgaatatcacaaggcaatggctgaggcgacggcg
agtcaaattcaaaccattctgaccgcttctcaaaacgagcgagcttattttgataacggt
aaaaaacaacatgctgtgaatgcaggtgatattgctgtcttggttcgaaccggtagtgaa
ggtcgtctgattaagaacgcgttgtcggaacaaggcattgcgagcgtgtacttatctaac
cgagatagcgtgttcaccagcttggtcgcgcaagatattcaacgcctattgcaaggggtg
ttgacgcctgaaaacgaccgtgcgttgcgcgcgagtttagcctcagagttgtttgctttg
gatgccgcatcattggatgaactcaataatgatgaagtggtttgggaaaacgtcgttaac
gaattccgagaatatcgtaagttgtggctgcaacgtggcgtattaccaatgcttcgcagc
gtgatcagtaaaaggcacctcgcggaacgcttactagaagaagaaaatggtgagcgctca
ctcactgatttgatgcacattggcgaactgttgcaacaagctaggcaggagctcgacagc
gactatggcttgttacgttggctagcagaagcgatatcagatgcgcaaaatggtttaggt
ggcagtgaagacgacattcaacgccttgaatcagagagaaacttagttcaaatcgttact
attcataaatcgaaaggtttggaatatgacctagtattcctgccgttcgtggcgagttat
cgtgaagcgagtgaaggtaagttctacgaccatgaatcagataccacagtgcttgatatt
acgggtagcgacagtgccttagcgcaagccgacaaagagcgattggcggaagacttacgt
ttgatttacgtggcgcttactcgtgccgtttacggttgtttcattggtatggctccttta
cgtaaagggcgttcaaccaaagagccgaccggcgttcacttaagtgccatgggctacttg
gttcaaaacggacaagagcaaggcatcgctgagttacatcaagctctgtcagcgattgag
ggtaagaattcaagtgtgctgctgtctggaacaccgactgctcacgagcacgtatttgta
caaacagaacaagtgagtgaagacttacatgctaacgaactcaaggcttcaattgaccga
gcttggcgtatcaccagctactcggggcttgtaaagcaaggcagtcatggtgctagtcat
gacgcaaccattgaggtgtctggctttgacattgactcggctgatgagcaggatgagtct
gagttgattgaacctgaacgctctatctttacgttccctcggggtgctcgcccaggtact
ttcttgcacaccttgtttgaggatgttgagtttactgagccagcaaccagcgaacataac
acgcaagtaatcactcacttattagagtgtgaacaatacgaattagagtggctacctgtg
cttcagcaactggtcgataccgttcttaacacagcgttggatggtaaaagcttaaagcta
agcgataaagactcgacgcaacgcttagttgagatggagttcttattaccgatcgaagtg
ttggccgcatctgagctgaatcaaaccattcaatatcacgatccgttatcggctaaagcg
ggcgacttaggtttccaaaccgtgcaaggcatgctgaaaggcttcatcgatttagtgttt
gagcaccaaggtaaatactatgtgctcgactggaaatcgaatcatttaggtgatgatgtt
gccgtctaccatggtgaggcattgaaatcggcgatggctgatcaccgctacgatctgcaa
tatcaaatctatgcgttggcattgcaccgcttcttacgcagccgcgttgcggattacagc
tatgatcagcactttggtggggtctattacttgtttttaagaggaatggacggccaatct
caacaaggtattttctctgcgaaacctacattggctttgctcgatgaaatggatcaattg
attgacggtaaagtgatagacagacgttcagcacaattgaatgacaatgaaactggacag
atggggcttttataa
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